ThorAxe Supplementary Material Website

To use it locally, you need a Julia version greater than 1.3. Then, you need to clone this git repo and do:

git clone https://github.com/PhyloSofS-Team/ThorAxeSupplementaryWebsite.git

cd ThorAxeSupplementaryWebsite

julia -e "using Pkg; Pkg.activate(\".\"); Pkg.instantiate(); Pkg.precompile();"

NOTE: If you want to add your own ThorAxe results to the local webpage, you need to copy the folder (gene) containing the thoraxe subfolder into public/data/thoraxe before running the server.

Then you can run the server by running the following command in the root folder of the repo:

GENIE_ENV=prod nohup bin/server &

Then you can see the webpage at localhost:8000/ThorAxe.

Singularity

To create a singularity image, you need to clone the repo as before and build the image using the definition file there:

git clone https://github.com/PhyloSofS-Team/ThorAxeSupplementaryWebsite.git

cd ThorAxeSupplementaryWebsite

sudo singularity build thoraxe-supplmat.sif Singularity

Then you can create an instance to run the server:

singularity instance start --bind .:/ThorAxeSuppl thoraxe-supplmat.sif thoraxe-supplmat

singularity run instance://thoraxe-supplmat