DendroTweaks is a Python toolbox designed for creating and validating single-cell biophysical models with active dendrites.
It is available both as a standalone Python package and a web-based application.
- Standalone Library: Explore the official documentation for detailed tutorials and API reference.
- Web Application: Access the GUI online via our platform at dendrotweaks.dendrites.gr.
- Quick Overview: Check out our e-poster, including a video demonstration, presented at the FENS Forum 2024 in Vienna.
For an in-depth understanding of DendroTweaks, refer to our publication in eLife:
Roman Makarov, Spyridon Chavlis, Panayiota Poirazi (2024).
DendroTweaks: An interactive approach for unraveling dendritic dynamics.
eLife 13:RP103324. https://doi.org/10.7554/eLife.103324.1
If you find DendroTweaks helpful for your research, please consider citing our work:
@article{Makarov2024,
title={DendroTweaks: An interactive approach for unraveling dendritic dynamics},
author={Makarov, Roman and Chavlis, Spyridon and Poirazi, Panayiota},
journal={eLife},
volume={13},
pages={RP103324},
year={2024},
doi={10.7554/eLife.103324.1}
}This project uses multiple licenses depending on the content:
-
Library code (
src/dendrotweaks/*.py): Mozilla Public License 2.0 (MPL-2.0).
All modifications to these files must remain under MPL-2.0 when redistributed. -
Documentation (
docs/): Creative Commons Attribution 4.0 (CC-BY-4.0).
You are free to copy, modify, and distribute the documentation, with attribution. -
Examples (
examples/): no formal license; provided for demonstration purposes.
Use freely in your own projects. -
Templates (
src/dendrotweaks/biophys/default_templates): no formal license (permissive). You may reuse, modify, or include them in your projects freely. -
Third-party or model files (
*.mod): license may vary or be unknown; see individual files.
Note: Previous versions of this project (before version 0.5.0) were released under GPL-3.0. This relicensing applies to releases from v0.5.0 onward.