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@tristan-f-r tristan-f-r commented Jun 16, 2025

While this wraps the entirety of capDSD, this specifically wraps the features from cDSD. I left a note why at the end of this description. Closes #276.

This duplicates a patch from #235 that allows SPRAS to support custom filename extensions in inputs.

Future Notes: If parse_inputs came with a gold standard (which would be useful for the Growing DAGs impl), we can use capDSD using the gold standard as an absolute truth.

@tristan-f-r tristan-f-r added the algorithm Pathway reconstruction algorithm to add to SPRAS label Jun 16, 2025
@tristan-f-r tristan-f-r marked this pull request as draft June 16, 2025 22:33
@tristan-f-r tristan-f-r changed the title feat: capDSD feat: cDSD Jun 16, 2025
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algorithm Pathway reconstruction algorithm to add to SPRAS

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cDSD

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