feat: cli#332

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tristan-f-r wants to merge 15 commits intomainfrom

Commits on Jul 15, 2025

Commits on Jul 16, 2025

docs: update visjs -> Snakefile
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Commits on Aug 24, 2025

Commits on Oct 4, 2025

Merge branch 'main' into cli
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Commits on Oct 15, 2025