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test(btb): singularity #383

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Merged
tristan-f-r merged 2 commits into from
Aug 28, 2025
Merged

test(btb): singularity #383

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test(btb): singularity
tristan-f-r Aug 28, 2025
d4bb58c
test(btb): add shutil import
tristan-f-r Aug 28, 2025
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12 changes: 12 additions & 0 deletions test/BowTieBuilder/test_btb.py
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Original file line number Diff line number Diff line change
@@ -1,3 +1,4 @@
import shutil
import sys
from pathlib import Path

Expand Down Expand Up @@ -306,3 +307,14 @@ def test_weight_one(self):

# Check if the sets are equal, regardless of the order of lines
assert output_content == expected_content, 'Output file does not match expected output file'

# Only run Singularity test if the binary is available on the system
# spython is only available on Unix, but do not explicitly skip non-Unix platforms
@pytest.mark.skipif(not shutil.which('singularity'), reason='Singularity not found on system')
def test_btb_singularity(self):
OUT_FILE_DEFAULT.unlink(missing_ok=True)
BTB.run(edges=Path(TEST_DIR, 'input', 'source-to-source-edges.txt'),
sources=Path(TEST_DIR, 'input', 'btb-sources.txt'),
targets=Path(TEST_DIR, 'input', 'btb-targets.txt'),
output_file=OUT_FILE_DEFAULT,
container_framework="singularity")
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