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1. vg vg Public

   Forked from vgteam/vg

   tools for working with genome variation graphs

   C++ 1

2. reference-based-cactus-aligner reference-based-cactus-aligner Public

   Faster than an all-to-all alignment for constructing cactus graphs. Starts by aligning all sequences to the reference. All the sequences that align poorly (or not at all) to the reference are then …

   Python 1

3. plot-cactus-alignment-depth plot-cactus-alignment-depth Public

   Plotting was originally built for comparing cactus and dipcall alignments between the reference and a set of given assemblies. Edit and run plot_alignment_depth.py to make plots.

   Python 1

4. Kinase-Consensus-Search Kinase-Consensus-Search Public

   Finds and annotates putative kinase consensus sites in yeast proteins.

   Python

5. DelayDifferentialEqnSimulator DelayDifferentialEqnSimulator Public

   Forked from WhitmanOptiLab/DENSE

   A generic library for simulating networks of ordinary and delay differential equations for systems modeling

   C++

6. graph-genomics-review graph-genomics-review Public

   Forked from vgteam/graph-genomics-review

   Precision pangenomics (review article on graph genomics)

   TeX