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Update to use markups ROI instead of annotations ROI #1

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20 changes: 9 additions & 11 deletions ProstateAblation/ProstateAblationUtils/steps/zFrameRegistration.py
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Original file line number Diff line number Diff line change
Expand Up @@ -275,7 +275,6 @@ class ProstateAblationZFrameRegistrationStep(ProstateAblationStep):
LayoutClass = qt.QVBoxLayout

def __init__(self, ProstateAblationSession):
self.annotationLogic = slicer.modules.annotations.logic()
self.zFrameRegistrationClass = getattr(sys.modules[__name__], self.getSetting("ZFrame_Registration_Class_Name"))
self.roiObserverTag = None
self.coverTemplateROI = None
Expand Down Expand Up @@ -315,7 +314,7 @@ def cleanup(self):

def onBackButtonClicked(self):
self.resetZFrameRegistration()
self.annotationLogic.StopPlaceMode(True)
slicer.mrmlScene.GetNodeByID("vtkMRMLInteractionNodeSingleton").SwitchToViewTransformMode() # stop place mode
self.removeZFrameInstructionAnnotation()
if self.session.previousStep:
self.session.previousStep.active = True
Expand Down Expand Up @@ -461,7 +460,7 @@ def addROIObserver(self):
@vtk.calldata_type(vtk.VTK_OBJECT)
def onNodeAdded(caller, event, calldata):
node = calldata
if isinstance(node, slicer.vtkMRMLAnnotationROINode):
if isinstance(node, slicer.vtkMRMLMarkupsROINode):
self.removeROIObserver()
self.coverTemplateROI = node
self.runZFrameRegistrationButton.enabled = self.isRegistrationPossible()
Expand All @@ -478,11 +477,8 @@ def removeROIObserver(self):
self.roiObserverTag = slicer.mrmlScene.RemoveObserver(self.roiObserverTag)

def activateCreateROIMode(self):
mrmlScene = self.annotationLogic.GetMRMLScene()
selectionNode = mrmlScene.GetNthNodeByClass(0, "vtkMRMLSelectionNode")
selectionNode.SetReferenceActivePlaceNodeClassName("vtkMRMLAnnotationROINode")
# self.annotationLogic.StopPlaceMode(False) # BUG: http://na-mic.org/Mantis/view.php?id=4355
self.annotationLogic.StartPlaceMode(False)
slicer.mrmlScene.GetNthNodeByClass(0, "vtkMRMLSelectionNode").SetReferenceActivePlaceNodeClassName("vtkMRMLMarkupsROINode")
slicer.modules.markups.logic().StartPlaceMode(False)

def addZFrameInstructions(self, step=1):
self.removeZFrameInstructionAnnotation()
Expand Down Expand Up @@ -513,7 +509,7 @@ def onApplyZFrameRegistrationButtonClicked(self):
zFrameTemplateVolume = self.logic.templateVolume
try:
if self.zFrameRegistrationClass is OpenSourceZFrameRegistration:
self.annotationLogic.SetAnnotationLockedUnlocked(self.coverTemplateROI.GetID())
self.coverTemplateROI.SetLocked(not self.coverTemplateROI.GetLocked())
self.zFrameCroppedVolume = self.logic.createCroppedVolume(zFrameTemplateVolume, self.coverTemplateROI)
self.zFrameLabelVolume = self.logic.createLabelMapFromCroppedVolume(self.zFrameCroppedVolume, "labelmap")
self.zFrameMaskedVolume = self.logic.createMaskedVolume(zFrameTemplateVolume, self.zFrameLabelVolume,
Expand Down Expand Up @@ -557,10 +553,12 @@ def applyZFrameTransform(self):
def onApproveZFrameRegistrationButtonClicked(self):
self.redSliceNode.SetSliceVisible(False)
if self.zFrameRegistrationClass is OpenSourceZFrameRegistration:
self.annotationLogic.SetAnnotationVisibility(self.coverTemplateROI.GetID())
roiDisplayNode = self.coverTemplateROI.GetDisplayNode()
roiDisplayNode.SetVisibility(not roiDisplayNode.GetVisibility())
self.session.approvedCoverTemplate = self.logic.templateVolume

def onRetryZFrameRegistrationButtonClicked(self):
self.removeZFrameInstructionAnnotation()
self.annotationLogic.SetAnnotationVisibility(self.coverTemplateROI.GetID())
roiDisplayNode = self.coverTemplateROI.GetDisplayNode()
roiDisplayNode.SetVisibility(not roiDisplayNode.GetVisibility())
self.initiateZFrameRegistrationStep()