Advanced Bioinformatics for Next Generation Sequencing

Reports and code for Advanced Bioinformatics for NGS assignments.

Assigments

1. Binary search and expectation maximization algorithm

• Binary search code and report
• EM report
• EM code

2. Genotype calling and eQTL analysis

• Genotype calling
• eQTL analysis part 1
• eQTL analysis part 2

3. Deep mutational scanning

• Report
• Code

4. Comparative genomics, phylogenomics, and comparative transcriptomics

• Comparative genomics
• Phylogenomics
• Comparative transcriptomics