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briandrawert merged 1 commit into from
Jan 23, 2025
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update copyright to 2025 #965

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2 changes: 1 addition & 1 deletion gillespy2/__init__.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/__version__.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/__init__.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/assignmentrule.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/cleanup.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/events.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/functiondefinition.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/gillespyError.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/gillespySolver.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/jsonify.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/liveGraphing.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/model.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/parameter.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/raterule.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/reaction.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/results.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/sortableobject.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/species.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/core/timespan.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/sbml/SBMLexport.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/sbml/SBMLimport.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/sbml/__init__.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/__init__.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/__init__.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/build/SConstruct
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/build/__init__.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/build/build_engine.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/build/expression.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/build/make.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/build/template_gen.py
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/SConscript
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/Sundials/SConscript
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/Tau/SConscript
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/Tau/tau.cpp
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/Tau/tau.h
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/arg_parser.cpp
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/arg_parser.h
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/model.cpp
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/model.h
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESimulation.cpp
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESolver.cpp
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESolver.h
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/ode_cpp_solver/SConscript
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SConscript
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASimulation.cpp
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASolver.cpp
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASolver.h
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/HybridModel.cpp
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/HybridModel.h
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/SConscript
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# GillesPy2 is a modeling toolkit for biochemical simulation.
# Copyright (C) 2019-2024 GillesPy2 developers.
# Copyright (C) 2019-2025 GillesPy2 developers.

# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSimulation.cpp
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSolver.cpp
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSolver.h
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/hybrid_template.cpp
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/*
* GillesPy2 is a modeling toolkit for biochemical simulation.
* Copyright (C) 2019-2024 GillesPy2 developers.
* Copyright (C) 2019-2025 GillesPy2 developers.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
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