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  1. RSS RSS Public

    Scripts for establishing replication stress signature

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  2. Single-cell-multi-omics-profiling-of-human-gliomas Single-cell-multi-omics-profiling-of-human-gliomas Public

    Forked from danasilv/Single-cell-multi-omics-profiling-of-human-gliomas

    Code for Chaligne, Gaiti, Silverbush, Schiffman et al. paper “Epigenetic encoding, heritability and plasticity of glioma transcriptional cell states”

    Jupyter Notebook 1

  3. NMD-paper NMD-paper Public

    Forked from zhiyhu/NMD-paper

    A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay

    R

  4. PISCES PISCES Public

    Forked from califano-lab/PISCES

    R package for Protein activity analysis of single-cell RNAseq.

    R

  5. leukemia-paper leukemia-paper Public

    Forked from kheleon/leukemia-paper

    Analysis code and data for leukemia paper (preliminary title: Single cell mRNA signals reveal a distinct developmental state of KMT2A-rearranged infant B-lymphoblastic leukaemia)

    HTML

  6. PhenoGraph PhenoGraph Public

    Forked from dpeerlab/PhenoGraph

    Subpopulation detection in high-dimensional single-cell data

    Python