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chore: add config/README.md to fulfill all the criteria of the Snakemake Workflow Catalog.

Status: Open.

#72 In TRON-Bioinformatics/tronmake-kmer-pipeline;

· johausmann opened on Jul 13, 2026

feat: add kmc3 and mmc

Status: Open.

#71 In TRON-Bioinformatics/tronmake-kmer-pipeline;

· johausmann opened on Jul 9, 2026

chore: add CITATION.cff

Status: Open.

#70 In TRON-Bioinformatics/tronmake-kmer-pipeline;

· johausmann opened on Jul 6, 2026

feat: add GGCAT

Status: Open.

#67 In TRON-Bioinformatics/tronmake-kmer-pipeline;

· johausmann opened on Jul 3, 2026

feat: strand-aware indexing

Status: Open.

#66 In TRON-Bioinformatics/tronmake-kmer-pipeline;

· johausmann opened on Jul 2, 2026

feat: add fulgor + sshash

Status: Open.

#63 In TRON-Bioinformatics/tronmake-kmer-pipeline;

· johausmann opened on Jul 1, 2026

feat: apptainer support

Status: Open.

#60 In TRON-Bioinformatics/tronmake-kmer-pipeline;

· johausmann opened on Jun 25, 2026

Improve memory consumption

Status: Open.

#50 In TRON-Bioinformatics/tronmake-kmer-pipeline;

· johausmann opened on Jun 10, 2025

Add documentation for pipeline

Status: Open.

#29 In TRON-Bioinformatics/tronmake-kmer-pipeline;

· johausmann opened on May 28, 2025

Add presence/absence output for kmindex parquet file

Status: Open.

#28 In TRON-Bioinformatics/tronmake-kmer-pipeline;

· johausmann opened on May 28, 2025

chore: deprecate python2 dependency in kmindex workflow

Status: Open.

#15 In TRON-Bioinformatics/tronmake-kmer-pipeline;

· johausmann opened on May 28, 2025

·  

v1.x.x minor release series

Add plotting feature based on ntcard etimations or minimiser from Raptor

Status: Open.

#13 In TRON-Bioinformatics/tronmake-kmer-pipeline;

· johausmann opened on May 28, 2025

·  

v1.x.x minor release series