Fix random "only endian='native' allowed for NETCDF3 files" error #850
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build and Test | |
| on: | |
| pull_request: | |
| push: | |
| branches: [master] | |
| jobs: | |
| run-serial: | |
| runs-on: ${{ matrix.os }} | |
| #env: | |
| # NO_NET: 1 | |
| strategy: | |
| matrix: | |
| python-version: [ "3.9", "3.10", "3.11", "3.12" ] | |
| os: [windows-latest, ubuntu-latest, macos-latest] | |
| platform: [x64, x32] | |
| exclude: | |
| - os: macos-latest | |
| platform: x32 | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: TEST | |
| init-shell: bash | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| numpy cython pip pytest hdf5 libnetcdf cftime zlib certifi | |
| --channel conda-forge | |
| - name: Install netcdf4-python | |
| run: | | |
| export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" # so setup.py finds nc-config | |
| python -m pip install -v -e . --no-deps --no-build-isolation --force-reinstall | |
| - name: Tests | |
| run: | | |
| pytest -s -rxs -v test | |
| run-mpi: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: [ "3.11" ] | |
| os: [ubuntu-latest] | |
| platform: [x64] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: TEST | |
| init-shell: bash | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| numpy cython pip pytest mpi4py hdf5=*=mpi* libnetcdf=*=mpi* cftime zlib certifi | |
| --channel conda-forge | |
| - name: Install netcdf4-python with mpi | |
| run: | | |
| export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" # so setup.py finds nc-config | |
| nc-config --all | |
| python -m pip install -v -e . --no-build-isolation --no-deps --force-reinstall | |
| - name: Tests | |
| run: | | |
| cd test && python run_all.py | |
| cd ../examples | |
| export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" | |
| which mpirun | |
| mpirun --version | |
| mpirun -np 4 --oversubscribe python mpi_example.py # for openmpi | |
| #mpirun -np 4 python mpi_example.py | |
| if [ $? -ne 0 ] ; then | |
| echo "hdf5 mpi test failed!" | |
| exit 1 | |
| else | |
| echo "hdf5 mpi test passed!" | |
| fi |