ZEAMAP Gene Expression

Tripal module for visualization of gene expression patterns in ZEAMAP

View a demo here: DEMO

Platform

• Drupal 7.x
• Tripal 7.x-3.x

Prerequisite

• R
• R/ape

Installation and Usage

• Make sure R (version 3.2.3 was used in ZEAMAP) and R package ape were correctly installed.
• Download this repository, switch to drupal environment, and lunch this module with drush en -y zmap_expression

NOTE

This module would generate temporary gene expression cluster files which were placed in drupal public directory ( sites/default/files/zmap_expression_search_result ). An additional timed task (e.g. crontab) to clear these temporary files would be recommended.