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@antigenomics

AntigenOmics

Mining antigen and antigen receptor repertoires. Immune repertoire biomarker databases and software tools.

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  1. vdjdb-db vdjdb-db Public

    🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!

    Groovy 132 27

  2. vdjmatch vdjmatch Public

    ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities

    Groovy 37 7

  3. vdjviz vdjviz Public

    ⚙️ A lightweight immune repertoire browser

    JavaScript 27 10

  4. repseq-annotation-tutorial repseq-annotation-tutorial Public

    📝 [Tutorial] RepSeq data mining basics in R

    TeX 10 6

  5. tcr-annotation-methodology tcr-annotation-methodology Public

    📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery

    TeX 13 4

  6. tcren-ms tcren-ms Public

    📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential

    Parrot 13 4

Repositories

Showing 10 of 53 repositories
  • vdjdb-db Public

    🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!

    antigenomics/vdjdb-db’s past year of commit activity
    Groovy 132 27 80 0 Updated Nov 12, 2024
  • mirpy Public

    Python library and snippets for AIRR-seq data analysis, based on our in-house scripts

    antigenomics/mirpy’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Nov 12, 2024
  • tcren-ms Public

    📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential

    antigenomics/tcren-ms’s past year of commit activity
    Parrot 13 4 1 0 Updated Nov 4, 2024
  • tcremp Public Forked from yuliajk/tcremp

    T-cell receptor sequence embedding via prototypes

    antigenomics/tcremp’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 0 0 Updated Oct 15, 2024
  • antigenomics.github.io Public

    🌐 Immuno Sequencing Algorithms Group web page

    antigenomics/antigenomics.github.io’s past year of commit activity
    JavaScript 0 CC-BY-4.0 0 0 0 Updated Jul 22, 2024
  • vdjdb-web Public

    Interactive browser for the VDJdb database

    antigenomics/vdjdb-web’s past year of commit activity
    HTML 14 Apache-2.0 1 9 3 Updated May 25, 2024
  • tcr-covid-classifier Public

    TCR motifs associated with infectious conditions and HLAs

    antigenomics/tcr-covid-classifier’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 16, 2024
  • vdjtrack Public

    📝 Detecting T-cell expansion and quantifying clone survival from deep profiling of immune repertoires

    antigenomics/vdjtrack’s past year of commit activity
    TeX 0 Apache-2.0 0 0 0 Updated Feb 29, 2024
  • pyigmap-old Public archive

    A smart wrapper for V(D)J mapping software

    antigenomics/pyigmap-old’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jan 31, 2024
  • vdjdb-structure Public

    🗂️ Template-based modelling of TCR:pMHC structures for VDJdb database

    antigenomics/vdjdb-structure’s past year of commit activity
    HTML 0 Apache-2.0 1 0 0 Updated Jul 14, 2023

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