geNomad v1.7.4

Fixed

• Fixed the parsing of MMseqs2 integrase output to extract only the gene accession, rather than the entire header. This addresses a bug introduced in version 1.5.2, where the integrase gene accession was not accurately parsed because the entire header was extracted. As a result, the find-proviruses module can now properly add integrases to gene tables and extend boundaries using integrase coordinates.

Changed

• Replace ambiguous variable name in read_fasta.
• Define name current_contig at the beginning of _append_aragorn_tsv.