Skip to content
View arunbodd's full-sized avatar
🏒
Hyrbid
🏒
Hyrbid

Block or report arunbodd

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 250 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
arunbodd/README.md

Hi there! I'm Arun Boddapati πŸ‘‹

Lead Scientist | Machine Learning Expert | Bioinformatics Researcher


  • 😊 Pronouns: He/Him
  • πŸŽ“ Education: Dual Master's degrees in Bioinformatics and Biomedical Sciences from Indiana University, USA and Symbiosis University, India
  • πŸ’Ό Experience: 9 years of expertise in computational biology/bioinformatics.
  • πŸ”¬ Current Role: Lead Scientist developing AI-driven solutions for complex biological problems
  • πŸš€ Focus Areas: Multi-Omics, Immunology, Infectious Diseases, Wastewater Surveillance, and Machine Learning applications in Biology
  • 🧠 Currently Learning: GenAI applications to Bioinformatics, LangChain tools & toolkits, and advanced ML for rare diseases
  • πŸ’» Tech Stack: Python, R, Nextflow, AWS, Docker, and exploring AI solution in biology.
  • πŸ† Recent Achievement: Top 8 ranking in WHO's global mock Mpox response (80+ teams worldwide)
  • 🧬 Specialties:
    • Developed Aquascope Nextflow pipeline for SARS-CoV-2 wastewater reporting at CDC
    • Created an nf-core compliance checker: Rule chunking tool for nf-core pipeline compliance validation
    • Expertise in Transcriptomics (scRNA, RNA, Novel transcripts, Alternate splicing, RNA Binding proteins), Whole Genome/Exome (Variant analysis), Proteomics (Mass Spec and Targetted NULISA panel) and Metagenomics analysis (Variant analysis and Phylogenetics)

πŸ“Š GitHub Analytics

GitHub Stats Β Β Β Β  Top Languages

---

πŸ”— Connect With Me

Portfolio Google Scholar LinkedIn Email


πŸ… Career Highlights

  • πŸ”¬ 720+ Citations: Co-Authored several high impact publications that showcases my skills in Bioinformatics/Data Science.
  • 🌊 CDC Pipeline: Developed Aquascope for national wastewater surveillance
  • πŸ€– AI Innovation:
    • Created nf-core compliance checker Rule chunking tool for pipeline compliance validation.
    • Actively working on establishing a prompt framework for nextflow pipeline refactoring and validation
  • 🌍 Global Recognition: Top scorer in WHO's international disease surveillance response (Monkey Pox) preparedness competition.

Profile Views

Pinned Loading

  1. CDCgov/aquascope CDCgov/aquascope Public

    Nextflow 20 15

  2. VCP_NULISA-Seq_Rshiny VCP_NULISA-Seq_Rshiny Public

    R

  3. Portfolio Portfolio Public

    I am a Bioinformatics Scientist by Profession, AI enthusiast by Curiosity and a Technologist by skillset. To know more about me Click the below link

    HTML 1

  4. lintelligence lintelligence Public

    Lintelligence is an advanced, intelligent validation tool that combines the power of Large Language Models (LLMs) with rule-based static analysis to ensure Nextflow pipelines, including nf-core and…

    Python