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Merged
ypriverol merged 13 commits into from
Mar 18, 2026
Merged

SomaScan/Olink example from PRIDE Affinity Archive #812

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984f30a
Somascan SDRF example
ypriverol Mar 13, 2026
881882d
Merge branch 'master' of https://github.com/bigbio/proteomics-sample-…
ypriverol Mar 13, 2026
75088e8
Add PDF specification v1.1.0-dev
github-actions[bot] Mar 13, 2026
fa47258
Minor changes
ypriverol Mar 13, 2026
7e54a0f
Merge branch 'dev' of https://github.com/bigbio/proteomics-sample-met…
ypriverol Mar 13, 2026
56a1db1
Add PDF specification v1.1.0-dev
github-actions[bot] Mar 13, 2026
3ddee3d
Minor change to the PAD000003
ypriverol Mar 13, 2026
18c9c82
Merge branch 'dev' of https://github.com/bigbio/proteomics-sample-met…
ypriverol Mar 13, 2026
8f102e2
Add PDF specification v1.1.0-dev
github-actions[bot] Mar 13, 2026
a543a3c
Minor changes
ypriverol Mar 13, 2026
6f63df7
Add PDF specification v1.1.0-dev
github-actions[bot] Mar 13, 2026
16c7448
PAD000001 examples Olink added
ypriverol Mar 17, 2026
bf41232
Add PDF specification v1.1.0-dev
github-actions[bot] Mar 17, 2026
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21 changes: 21 additions & 0 deletions examples/PAD000001/PAD000001.sdrf.tsv
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source name characteristics[organism] characteristics[organism part] characteristics[cell type] characteristics[biological replicate] characteristics[pooled sample] characteristics[disease] characteristics[individual] characteristics[age] characteristics[sex] characteristics[sample matrix] assay name technology type comment[technical replicate] comment[platform] comment[panel name] comment[olink panel] comment[olink platform] comment[npx normalization] comment[quantification unit] comment[data file] comment[sdrf version] comment[sdrf template] comment[sdrf template] comment[sdrf template]
XB100 homo sapiens blood plasma not applicable 1 not pooled prediabetes XB100 55Y female blood plasma PAD000001-XB100 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB107 homo sapiens blood plasma not applicable 2 not pooled prediabetes XB107 62Y female blood plasma PAD000001-XB107 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB112 homo sapiens blood plasma not applicable 3 not pooled normal XB112 29Y female blood plasma PAD000001-XB112 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB114 homo sapiens blood plasma not applicable 4 not pooled normal XB114 54Y female blood plasma PAD000001-XB114 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB115 homo sapiens blood plasma not applicable 5 not pooled normal XB115 50Y male blood plasma PAD000001-XB115 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB14 homo sapiens blood plasma not applicable 6 not pooled normal XB14 37Y female blood plasma PAD000001-XB14 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB20 homo sapiens blood plasma not applicable 7 not pooled normal XB20 69Y male blood plasma PAD000001-XB20 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB21 homo sapiens blood plasma not applicable 8 not pooled normal XB21 68Y female blood plasma PAD000001-XB21 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB22 homo sapiens blood plasma not applicable 9 not pooled normal XB22 50Y male blood plasma PAD000001-XB22 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB25 homo sapiens blood plasma not applicable 10 not pooled normal XB25 52Y female blood plasma PAD000001-XB25 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB54 homo sapiens blood plasma not applicable 11 not pooled normal XB54 32Y female blood plasma PAD000001-XB54 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB59 homo sapiens blood plasma not applicable 12 not pooled normal XB59 61Y female blood plasma PAD000001-XB59 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB6 homo sapiens blood plasma not applicable 13 not pooled prediabetes XB6 58Y female blood plasma PAD000001-XB6 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB65 homo sapiens blood plasma not applicable 14 not pooled normal XB65 64Y female blood plasma PAD000001-XB65 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB68 homo sapiens blood plasma not applicable 15 not pooled normal XB68 58Y male blood plasma PAD000001-XB68 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB79 homo sapiens blood plasma not applicable 16 not pooled normal XB79 36Y female blood plasma PAD000001-XB79 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB89 homo sapiens blood plasma not applicable 17 not pooled normal XB89 57Y male blood plasma PAD000001-XB89 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB94 homo sapiens blood plasma not applicable 18 not pooled prediabetes XB94 66Y female blood plasma PAD000001-XB94 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB95 homo sapiens blood plasma not applicable 19 not pooled prediabetes XB95 65Y male blood plasma PAD000001-XB95 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
XB97 homo sapiens blood plasma not applicable 20 not pooled normal XB97 51Y male blood plasma PAD000001-XB97 protein expression profiling by antibody array 1 Olink Explore 1536 Olink Explore 1536 Explore 1536 Olink Explore HT intensity normalized NPX PAD000001_olink_npx.csv v1.1.0 NT=affinity-proteomics;VV=v1.0.0 NT=olink;VV=v1.0.0 NT=human;VV=v1.1.0
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