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Add native Bruker .d file support for QC statistics

Status: Open.

#34 In bigbio/quantmsdiann;

· ypriverol opened on Apr 5, 2026

Implement the first version of QPX in the pipeline

Status: Open.

#25 In bigbio/quantmsdiann;

· ypriverol opened on Apr 1, 2026

Paramter passing to BIGBIO_QUANTMS:QUANTMS:DIA:INDIVIDUAL_ANALYSIS

Status: Open.

#21 In bigbio/quantmsdiann;

· enryH opened on Mar 30, 2026

Phase 6: Consolidate DIA-NN parameter generation to sdrf-pipelines

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#4 In bigbio/quantmsdiann;

· ypriverol opened on Feb 24, 2026

Phase 5: DDA data analysis support via DIA-NN (v2.3.2+)

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#5 In bigbio/quantmsdiann;

· ypriverol opened on Feb 24, 2026

Phase 4: Immunopeptidomics support with InfinDIA and model fine-tuning

Status: Open.

Feature

#10 In bigbio/quantmsdiann;

· ypriverol opened on Feb 24, 2026

DIA-NN advanced features: phosphoproteomics, plexDIA, immunopeptidomics, DDA, and infrastructure improvements

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

Feature

#8 In bigbio/quantmsdiann;

· ypriverol opened on Feb 24, 2026