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improve comment #79

Workflow file for this run

name: Build Wheels
on: [push, pull_request]
jobs:
build_wheels:
name: Build wheels on ${{ matrix.os }}
runs-on: ${{ matrix.os }}
strategy:
matrix:
# macos-13 is an intel runner, macos-14 is apple silicon
os: [ubuntu-20.04, windows-2019, macos-13, macos-14]
env:
# Seems to have trouble parsing our setup.py, thus:
CIBW_PROJECT_REQUIRES_PYTHON: ">=3.9"
# Install numpy with a wheel (do NOT compile it):
CIBW_BEFORE_BUILD: "pip install --only-binary :all: -r requirements.txt"
# There are/were no numpy wheels for these:
CIBW_SKIP: pp37-* pp38-* pp39-* pp310-* cp39-manylinux_i686 cp310-manylinux_i686 cp311-manylinux_i686 cp312-manylinux_i686 *-musllinux_*
# configure cibuildwheel to build native arch & aarch64 too
CIBW_ARCHS_LINUX: auto aarch64
# Quick test with C code using NumPy C API:
CIBW_TEST_COMMAND: "python {package}/Tests/test_Cluster.py"
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0 # Optional
submodules: true # Optional, use if you have submodules
- name: Set up QEMU
if: runner.os == 'Linux'
uses: docker/setup-qemu-action@v3
with:
platforms: all
- name: Checkout tag/commit
run: |
git submodule update --init biopython
cd biopython
# Use commit hash if tag is still pending:
# This should be the commit for Biopython 1.84:
git checkout c6120cde9ba9de1ca98a92efad5037a2f1643214
cd ..
- name: Build wheels
uses: pypa/[email protected]
with:
package-dir: biopython
output-dir: wheelhouse
- uses: actions/upload-artifact@v4
with:
name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
path: ./wheelhouse/*.whl