THIS WORKFLOW IS DEPRECATED. Please use the gatk-variantcalling workflow.
This repository contains a Biowdl workflows which uses Haplotypecaller to perform variantcalling.
You can find the documentation here
This workflow is part of Biowdl, developed by the SASC team at Leiden University Medical Center.
For any question related to this workflow, please use the github issue tracker or contact the SASC team directly at: sasc@lumc.nl.