FHIR_Tester

FHIR Tester is a Test platform for FHIR Genomics.

Overview

FHIR Tester can perform automative test for both FHIR Genomics servers and SMART Platform ( SMART Health IT – Connecting health system data to innovators’ apps ) Apps. For server that follows FHIR standards, FHIR Tester can test server’s capability of handling FHIR Genomics resources. Or user can define their own test process wit FHIR Test sandbox provided by FHIR Tester. For SMART apps, FHIR Tester can execute user defined front-end test process, with Front-end Test language, Monkey ( GitHub - ideaworld/Monkey: A frontend testing formal language ), FHIR Tester also provides standard SMART app launch process and FHIR Genomics auth process.

Deployment

FHIR Tester backend is for the back-end service, which provides test task performing.
FHIR Tester static is for the front-end

FHIR Tester Backend Deployment

This documents assume that you already have MySQL, Python ,Redis, and pip installed in your system.
Python: 2.7
MySQL: 5.6^
Redis 3.2.3^

Install Requirements

Install other dependencies

sudo apt-get install build-essential libssl-dev libffi-dev libmysqlclient-dev 
sudo apt-get install python-dev python-apt gyp

In Directory FHIR_Tester, run command

pip install -r requirements.txt

Setup Database & Redis

1. Create database named fhirtest.
2. In Directory FHIR_Tester_backend.
3. Open FHIR_Tester/settings.py
4. In line 68, set your database setting. In line 83, set your Redis address:port
5. In Directory FHIR_Tester_backend, run command

python manage.py makemigrations
python manage.py migrate

Compile CPP code

The CPP code is used to monitor user defined test process with a certain time and memory.

CPP Code compile may relay on your operating system.

Debian:

CPP Code for Linux is under FHIR_Tester_backend/home/linux_cpp

 gcc -c -std=c++11 -Wall Runner.cpp -fPIC
g++ Runner.o -o Runner.so -Wl,--gc-sections -fPIC -shared

Put Runner.so under FHIR_Tester_backend/home/

Mac OS X

CPP Code for Mac is under FHIR_Tester_backend/home/

clang++ -c -std=c++11 -Wall -fPIC -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7  Runner.cpp
clang++ -std=c++11 -stdlib=libc++ -shared -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -L/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/config -lpython2.7 -ldl -framework CoreFoundation Runner.o -o Runner.so

Start service

Make sure Redis & MySQL is running before you start FHIR Tester Service

Under FHIR_Tester_backend, run

You may need open a new terminal window, or add & to the end of the first command to start both of them.

python manage.py runserver
python manage.py celery worker

The first one is for HTTP/WebSockets handle. Second is for Celery Multithread.

FHIR Tester Front-end Deployment

Assume you have bower, jsx and npm installed
FHIR Tester Front-end is developed with react and bootstrap. It can be served with any http server.

1. Under FHIR_Tester_static, run

bower install
npm install

2. In file js/build/config.js, line 3, set app.host to your server address. (For example http://localhost:8000) In file js/build/conn.js, line 7, set your server address as well.

3. Under directory FHIR_Tester_static/js, run

jsx --watch src build

then ctrl+c to exit.

4. Use any Http server to serve those static files. For example, python simple http server, run

python -m SimpleHTTPServer [port]