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Merge pull request #2 from brain-bican/issue_1
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Fix issue #1
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@hkir-dev
hkir-dev authored Jul 10, 2024
2 parents 8c65125 + ee229ba commit bcc5332
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Showing 24 changed files with 57,264 additions and 64,737 deletions.
273 changes: 132 additions & 141 deletions dmbao-base.json
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130 changes: 63 additions & 67 deletions dmbao-base.obo
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Original file line number Diff line number Diff line change
@@ -1,14 +1,10 @@
format-version: 1.2
data-version: https://purl.brain-bican.org/ontology/dmbao/releases/2023-08-25/dmbao-base.owl
data-version: https://purl.brain-bican.org/ontology/dmbao/releases/2024-07-10/dmbao-base.owl
ontology: https://purl.brain-bican.org/ontology/dmbao/dmbao-base.owl
property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/
property_value: http://purl.org/dc/terms/title "Developing Mouse Brain Atlas Ontology" xsd:string
property_value: owl:versionInfo "2023-08-25" xsd:string

[Term]
id: ABA:ENTITY
property_value: prefLabel "ABA entity" xsd:string
property_value: owl:versionInfo "2024-07-10" xsd:string

[Term]
id: CL:0000000
Expand All @@ -22,10 +18,26 @@ property_value: prefLabel "migratory cranial neural crest cell" xsd:string
id: CL:0000031
property_value: prefLabel "neuroblast (sensu Vertebrata)" xsd:string

[Term]
id: CL:0000034
property_value: prefLabel "stem cell" xsd:string

[Term]
id: CL:0000039
property_value: prefLabel "germ line cell" xsd:string

[Term]
id: CL:0000056
property_value: prefLabel "myoblast" xsd:string

[Term]
id: CL:0000057
property_value: prefLabel "fibroblast" xsd:string

[Term]
id: CL:0000064
property_value: prefLabel "ciliated cell" xsd:string

[Term]
id: CL:0000065
property_value: prefLabel "ependymal cell" xsd:string
Expand Down Expand Up @@ -104,12 +116,16 @@ property_value: prefLabel "neurectodermal cell" xsd:string

[Term]
id: CL:0000136
property_value: prefLabel "fat cell" xsd:string
property_value: prefLabel "adipocyte" xsd:string

[Term]
id: CL:0000138
property_value: prefLabel "chondrocyte" xsd:string

[Term]
id: CL:0000147
property_value: prefLabel "pigment cell" xsd:string

[Term]
id: CL:0000149
property_value: prefLabel "visual pigment cell" xsd:string
Expand Down Expand Up @@ -262,6 +278,10 @@ property_value: prefLabel "angioblastic mesenchymal cell" xsd:string
id: CL:0000573
property_value: prefLabel "retinal cone cell" xsd:string

[Term]
id: CL:0000586
property_value: prefLabel "germ cell" xsd:string

[Term]
id: CL:0000598
property_value: prefLabel "pyramidal neuron" xsd:string
Expand Down Expand Up @@ -9408,9 +9428,9 @@ property_value: prefLabel "superficial stratum of PHyB-I" xsd:string
id: DMBA:16271
name: lateral tuberal nucleus
synonym: "LTu" EXACT []
is_a: UBERON:0000435
intersection_of: UBERON:0000435 {name="lateral tuberal nucleus"}
intersection_of: BFO:0000050 NCBITaxon:10090 {name="lateral tuberal nucleus"}
is_a: UBERON:8440041
intersection_of: UBERON:8440041 {name="tuberal nucleus (sensu Rodentia)"}
intersection_of: BFO:0000050 NCBITaxon:10090 {name="tuberal nucleus (sensu Rodentia)"}
relationship: BFO:0000050 DMBA:16270 ! superficial stratum of PHyB-I
relationship: BFO:0000050 NCBITaxon:10090
property_value: IAO:0000589 "lateral tuberal nucleus" xsd:string
Expand Down Expand Up @@ -22254,10 +22274,6 @@ property_value: prefLabel "leptomeninx" xsd:string
id: UBERON:0000434
property_value: prefLabel "anterior paraventricular nucleus of thalamus" xsd:string

[Term]
id: UBERON:0000435
property_value: prefLabel "lateral tuberal nucleus" xsd:string

[Term]
id: UBERON:0000446
property_value: prefLabel "septum of telencephalon" xsd:string
Expand Down Expand Up @@ -22430,6 +22446,14 @@ property_value: prefLabel "skeletal joint" xsd:string
id: UBERON:0000988
property_value: prefLabel "pons" xsd:string

[Term]
id: UBERON:0000990
property_value: prefLabel "reproductive system" xsd:string

[Term]
id: UBERON:0000991
property_value: prefLabel "gonad" xsd:string

[Term]
id: UBERON:0001003
property_value: prefLabel "skin epidermis" xsd:string
Expand Down Expand Up @@ -23358,10 +23382,6 @@ property_value: prefLabel "periventricular zone of hypothalamus" xsd:string
id: UBERON:0002272
property_value: prefLabel "medial zone of hypothalamus" xsd:string

[Term]
id: UBERON:0002273
property_value: prefLabel "lateral zone of hypothalamus" xsd:string

[Term]
id: UBERON:0002275
property_value: prefLabel "reticular formation" xsd:string
Expand All @@ -23382,10 +23402,6 @@ property_value: prefLabel "central canal of spinal cord" xsd:string
id: UBERON:0002298
property_value: prefLabel "brainstem" xsd:string

[Term]
id: UBERON:0002301
property_value: prefLabel "layer of neocortex" xsd:string

[Term]
id: UBERON:0002304
property_value: prefLabel "layer of dentate gyrus" xsd:string
Expand Down Expand Up @@ -23502,10 +23518,6 @@ property_value: prefLabel "hippocampal formation" xsd:string
id: UBERON:0002422
property_value: prefLabel "fourth ventricle" xsd:string

[Term]
id: UBERON:0002430
property_value: prefLabel "lateral hypothalamic area" xsd:string

[Term]
id: UBERON:0002434
property_value: prefLabel "pituitary stalk" xsd:string
Expand Down Expand Up @@ -24018,10 +24030,6 @@ property_value: prefLabel "anterior spinocerebellar tract" xsd:string
id: UBERON:0002992
property_value: prefLabel "paratenial nucleus" xsd:string

[Term]
id: UBERON:0002995
property_value: prefLabel "substantia nigra pars lateralis" xsd:string

[Term]
id: UBERON:0003001
property_value: prefLabel "nervous system lemniscus" xsd:string
Expand Down Expand Up @@ -24246,6 +24254,10 @@ property_value: prefLabel "cranium" xsd:string
id: UBERON:0003129
property_value: prefLabel "skull" xsd:string

[Term]
id: UBERON:0003133
property_value: prefLabel "reproductive organ" xsd:string

[Term]
id: UBERON:0003212
property_value: prefLabel "gustatory organ" xsd:string
Expand Down Expand Up @@ -24394,6 +24406,10 @@ property_value: prefLabel "digestive tract epithelium" xsd:string
id: UBERON:0003931
property_value: prefLabel "diencephalic white matter" xsd:string

[Term]
id: UBERON:0003937
property_value: prefLabel "reproductive gland" xsd:string

[Term]
id: UBERON:0003941
property_value: prefLabel "cerebellum anterior vermis" xsd:string
Expand Down Expand Up @@ -24810,6 +24826,10 @@ property_value: prefLabel "ectodermal placode" xsd:string
id: UBERON:0005090
property_value: prefLabel "muscle structure" xsd:string

[Term]
id: UBERON:0005156
property_value: prefLabel "reproductive structure" xsd:string

[Term]
id: UBERON:0005157
property_value: prefLabel "epithelial fold" xsd:string
Expand Down Expand Up @@ -24966,30 +24986,6 @@ property_value: prefLabel "photoreceptor array" xsd:string
id: UBERON:0005389
property_value: prefLabel "transparent eye structure" xsd:string

[Term]
id: UBERON:0005390
property_value: prefLabel "cortical layer I" xsd:string

[Term]
id: UBERON:0005391
property_value: prefLabel "cortical layer II" xsd:string

[Term]
id: UBERON:0005392
property_value: prefLabel "cortical layer III" xsd:string

[Term]
id: UBERON:0005393
property_value: prefLabel "cortical layer IV" xsd:string

[Term]
id: UBERON:0005394
property_value: prefLabel "cortical layer V" xsd:string

[Term]
id: UBERON:0005395
property_value: prefLabel "cortical layer VI" xsd:string

[Term]
id: UBERON:0005401
property_value: prefLabel "cerebral hemisphere gray matter" xsd:string
Expand Down Expand Up @@ -25074,6 +25070,10 @@ property_value: prefLabel "rhombomere 7" xsd:string
id: UBERON:0005527
property_value: prefLabel "rhombomere 8" xsd:string

[Term]
id: UBERON:0005564
property_value: prefLabel "gonad primordium" xsd:string

[Term]
id: UBERON:0005566
property_value: prefLabel "rhombomere 1 floor plate" xsd:string
Expand Down Expand Up @@ -26070,10 +26070,6 @@ property_value: prefLabel "dermal skeleton" xsd:string
id: UBERON:0010371
property_value: prefLabel "ecto-epithelium" xsd:string

[Term]
id: UBERON:0010403
property_value: prefLabel "brain marginal zone" xsd:string

[Term]
id: UBERON:0010409
property_value: prefLabel "ocular surface region" xsd:string
Expand Down Expand Up @@ -26512,7 +26508,7 @@ property_value: prefLabel "brainstem white matter" xsd:string

[Term]
id: UBERON:0014892
property_value: prefLabel "skeletal muscle organ" xsd:string
property_value: prefLabel "skeletal muscle organ, vertebrate" xsd:string

[Term]
id: UBERON:0014903
Expand All @@ -26522,10 +26518,6 @@ property_value: prefLabel "primordial vasculature" xsd:string
id: UBERON:0014913
property_value: prefLabel "ventral pallium" xsd:string

[Term]
id: UBERON:0014935
property_value: prefLabel "cerebral cortex marginal layer" xsd:string

[Term]
id: UBERON:0014950
property_value: prefLabel "layer of developing cerebral cortex" xsd:string
Expand Down Expand Up @@ -27034,10 +27026,6 @@ property_value: prefLabel "external integument structure" xsd:string
id: UBERON:8410081
property_value: prefLabel "blood microvessel" xsd:string

[Term]
id: UBERON:8440004
property_value: prefLabel "laminar subdivision of the cortex" xsd:string

[Term]
id: UBERON:8440014
property_value: prefLabel "ventrolateral preoptic nucleus" xsd:string
Expand All @@ -27054,7 +27042,15 @@ property_value: prefLabel "noradrenergic cell group A4" xsd:string
id: UBERON:8440021
property_value: prefLabel "noradrenergic cell group A7" xsd:string

[Term]
id: UBERON:8440041
property_value: prefLabel "tuberal nucleus (sensu Rodentia)" xsd:string

[Term]
id: UBERON:8600004
property_value: prefLabel "visceral muscle tissue" xsd:string

[Term]
id: UBERON:8600018
property_value: prefLabel "neuroendocrine system" xsd:string

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