Skip to content

qtltools 1.3.1 (new formula) #2021

qtltools 1.3.1 (new formula)

qtltools 1.3.1 (new formula) #2021

Triggered via pull request August 12, 2024 16:04
Status Cancelled
Total duration 20m 39s
Artifacts 1

build-bottles.yml

on: pull_request
Matrix: build-bottles
Fit to window
Zoom out
Zoom in

Annotations

10 errors and 2 warnings
build-bottles (macos-14)
brewsci/bio/qtltools: failed
build-bottles (macos-14)
test failed
`brew test --verbose brewsci/bio/qtltools` failed on macOS Sonoma (14) on Apple Silicon!: Formula/qtltools.rb#L42
/opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/bin/bundle clean ==> Testing brewsci/bio/qtltools Error: brewsci/bio/qtltools: failed ::error::brewsci/bio/qtltools: failed An exception occurred within a child process: Errno::ENOENT: No such file or directory @ rb_sysopen - /Users/runner/Library/Caches/Homebrew/downloads/2142712ff68201235ed04618f313f072a8d13b5e0fd9c5d98bb3b03dad707941--genes.50percent.chr22.bed.gz /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/fileutils.rb:2278:in `initialize' /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/fileutils.rb:2278:in `open' /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/fileutils.rb:2278:in `copy_file' /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/fileutils.rb:1078:in `copy_file' /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/fileutils.rb:877:in `block in cp' /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/fileutils.rb:2469:in `block in fu_each_src_dest' /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/fileutils.rb:2485:in `fu_each_src_dest0' /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/fileutils.rb:2467:in `fu_each_src_dest' /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/fileutils.rb:876:in `cp' /opt/homebrew/Library/Taps/brewsci/homebrew-bio/Formula/qtltools.rb:56:in `block in <class:Qtltools>' /opt/homebrew/Library/Homebrew/formula.rb:2800:in `block (3 levels) in run_test' /opt/homebrew/Library/Homebrew/extend/kernel.rb:534:in `with_env' /opt/homebrew/Library/Homebrew/formula.rb:2799:in `block (2 levels) in run_test' /opt/homebrew/Library/Homebrew/formula.rb:1193:in `with_logging' /opt/homebrew/Library/Homebrew/formula.rb:2798:in `block in run_test' /opt/homebrew/Library/Homebrew/mktemp.rb:75:in `block in run' /opt/homebrew/Library/Homebrew/mktemp.rb:75:in `chdir' /opt/homebrew/Library/Homebrew/mktemp.rb:75:in `run' /opt/homebrew/Library/Homebrew/formula.rb:3109:in `mktemp' /opt/homebrew/Library/Homebrew/formula.rb:2792:in `run_test' /opt/homebrew/Library/Homebrew/test.rb:48:in `block in <main>' /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/timeout.rb:186:in `block in timeout' /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/timeout.rb:41:in `handle_timeout' /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/timeout.rb:195:in `timeout' /opt/homebrew/Library/Homebrew/test.rb:52:in `<main>'
build-bottles (macos-14)
Process completed with exit code 1.
build-bottles (ubuntu-latest)
brewsci/bio/qtltools 1.3.1 did not build
`brew install --verbose --formula --build-bottle brewsci/bio/qtltools` failed on Linux!: Formula/qtltools.rb#L24
xbrew/opt/boost/include g++ -std=c++0x -o obj/rep_main.o -c src/mode_rep/rep_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -Ilib/OTools -isystem lib -I/home/linuxbrew/.linuxbrew/opt/r/include -I/home/linuxbrew/.linuxbrew/opt/htslib/include -I/home/linuxbrew/.linuxbrew/opt/boost/include g++ -std=c++0x -o obj/rep_management.o -c src/mode_rep/rep_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -Ilib/OTools -isystem lib -I/home/linuxbrew/.linuxbrew/opt/r/include -I/home/linuxbrew/.linuxbrew/opt/htslib/include -I/home/linuxbrew/.linuxbrew/opt/boost/include g++ -std=c++0x -o obj/rep_nominal_pass.o -c src/mode_rep/rep_nominal_pass.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -Ilib/OTools -isystem lib -I/home/linuxbrew/.linuxbrew/opt/r/include -I/home/linuxbrew/.linuxbrew/opt/htslib/include -I/home/linuxbrew/.linuxbrew/opt/boost/include g++ -std=c++0x -o obj/rep_read_covariates.o -c src/mode_rep/rep_read_covariates.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -Ilib/OTools -isystem lib -I/home/linuxbrew/.linuxbrew/opt/r/include -I/home/linuxbrew/.linuxbrew/opt/htslib/include -I/home/linuxbrew/.linuxbrew/opt/boost/include g++ -std=c++0x -o obj/rep_read_genotypes.o -c src/mode_rep/rep_read_genotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -Ilib/OTools -isystem lib -I/home/linuxbrew/.linuxbrew/opt/r/include -I/home/linuxbrew/.linuxbrew/opt/htslib/include -I/home/linuxbrew/.linuxbrew/opt/boost/include g++ -std=c++0x -o obj/rep_read_phenotypes.o -c src/mode_rep/rep_read_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -Ilib/OTools -isystem lib -I/home/linuxbrew/.linuxbrew/opt/r/include -I/home/linuxbrew/.linuxbrew/opt/htslib/include -I/home/linuxbrew/.linuxbrew/opt/boost/include g++ -std=c++0x -o obj/rep_read_qtls.o -c src/mode_rep/rep_read_qtls.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -Ilib/OTools -isystem lib -I/home/linuxbrew/.linuxbrew/opt/r/include -I/home/linuxbrew/.linuxbrew/opt/htslib/include -I/home/linuxbrew/.linuxbrew/opt/boost/include g++ -std=c++0x -o obj/rtc_chunking.o -c src/mode_rtc/rtc_chunking.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -Ilib/OTools -isystem lib -I/home/linuxbrew/.linuxbrew/opt/r/include -I/home/linuxbrew/.linuxbrew/opt/htslib/include -I/home/linuxbrew/.linuxbrew/opt/boost/include g++ -std=c++0x -o obj/rtc_collapse_phenotypes.o -c src/mode_rtc/rtc_collapse_phenotypes.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -Ilib/OTools -isystem lib -I/home/linuxbrew/.linuxbrew/opt/r/include -I/home/linuxbrew/.linuxbrew/opt/htslib/include -I/home/linuxbrew/.linuxbrew/opt/boost/include g++ -std=c++0x -o obj/rtc_common.o -c src/mode_rtc/rtc_common.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -Ilib/OTools -isystem lib -I/home/linuxbrew/.linuxbrew/opt/r/include -I/home/linuxbrew/.linuxbrew/opt/htslib/include -I/home/linuxbrew/.linuxbrew/opt/boost/include g++ -std=c++0x -o obj/rtc_gwas_cis.o -c src/mode_rtc/rtc_gwas_cis.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -Ilib/OTools -isystem lib -I/home/linuxbrew/.linuxbrew/opt/r/include -I/home/linuxbrew/.linuxbrew/opt/htslib/include -I/home/linuxbrew/.linuxbrew/opt/boost/include g++ -std=c++0x -o obj/rtc_gwas_trans.o -c src/mode_rtc/rtc_gwas_trans.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -Ilib/OTools -isystem lib -I/home/linuxbrew/.linuxbrew/opt/r/include -I/home/linuxbrew/.linuxbrew/opt/htslib/include -I/home/linuxbrew/.linuxbrew/op
build-bottles (ubuntu-latest)
install failed
build-bottles (ubuntu-latest)
Process completed with exit code 1.
build-bottles (macos-13)
The run was canceled by @YoshitakaMo.
build-bottles (macos-13)
The operation was canceled.
build-bottles (macos-14)
No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.
build-bottles (ubuntu-latest)
No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size
bottles-macos-13
1.46 MB