GitHub - buschman-lab/CortexDynamicBehavioralPhenotype: Code to support "Differences in the expression of cortex-wide neural dynamics is related to behavioral phenotype". See https://github.com/cmacdow/fpCNMF for motif fitting code.

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Code to support "Differences in the expression of cortex-wide neural dynamics is related to behavioral phenotype". See https://github.com/cmacdow/fpCNMF for motif fitting code.

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Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
Plotting		Plotting
.gitignore		.gitignore
CompareMotifDynamicsness.m		CompareMotifDynamicsness.m
CompareMotifLoadings.m		CompareMotifLoadings.m
ComparePhenotypeMotifs.m		ComparePhenotypeMotifs.m
ComparePhenotypeNeurotype.m		ComparePhenotypeNeurotype.m
DistanceToHyperplane.m		DistanceToHyperplane.m
GetBehavioralData.m		GetBehavioralData.m
GetPairedMouseID.m		GetPairedMouseID.m
MotifDecorder_VPA.m		MotifDecorder_VPA.m
MouseNumFromFileName.m		MouseNumFromFileName.m
Neurotype.m		Neurotype.m
Neurotype_Social.m		Neurotype_Social.m
OrderMotifsByPEV.m		OrderMotifsByPEV.m
Phenotype.m		Phenotype.m
Pipeline.m		Pipeline.m
Pipeline_Social.m		Pipeline_Social.m
ProcessLogs_old.m		ProcessLogs_old.m
ProcessMovementLogs.m		ProcessMovementLogs.m
README.txt		README.txt
ReClusterW.m		ReClusterW.m
RemoveNoiseClusters.m		RemoveNoiseClusters.m
SVMClassifier_Binary_linear.m		SVMClassifier_Binary_linear.m
VPA_ClusterMotifs.m		VPA_ClusterMotifs.m
VPA_FitMotifs.m		VPA_FitMotifs.m
VPA_FitMotifs_Social.m		VPA_FitMotifs_Social.m
VPA_RefitBasisMotifs.m		VPA_RefitBasisMotifs.m
VPA_RefitBasisMotifs_Social.m		VPA_RefitBasisMotifs_Social.m
VPA_RefitBasisMotifs_Swarm.m		VPA_RefitBasisMotifs_Swarm.m
fig_params_vpa.m		fig_params_vpa.m
general_params_vpa.m		general_params_vpa.m
isVPA.m		isVPA.m
pvaluefromz.m		pvaluefromz.m
substring_filename.m		substring_filename.m
whatSex.m		whatSex.m

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This directory contain specialized code for analyzing VPA-Control animal data. 
Requires both Widefield_imaging_analysis and fpCNMF located on the MATLAB/SPOCK Path.

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Code to support "Differences in the expression of cortex-wide neural dynamics is related to behavioral phenotype". See https://github.com/cmacdow/fpCNMF for motif fitting code.

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