vcf2aln version 0.13.2

Full Changelog: v.0.13.1...v.0.13.2

• Added option to infer reference base (in lower case) when site is missing for a sample

vcf2aln version 0.13.1

• Fixed a bug when missing sites were not skipped and the reference sequence was included

vcf2aln version 0.13.0

• Adds option to output reference sequence as part of the final alignment(s)

vcf2aln version 0.12.1

• Fixed glitch where the region ID was added to the sequence length value
• Fixed glitch outputting a zero-length partition at beginning of table

vcf2aln version 0.12.0

• Added the option to output contig-level partition table for concatenated alignments.

vcf2aln version 0.11.5

• Handling for diploid missing data calls in haploid VCFs
• encdoed typo correction

vcf2aln version 0.11.4

Fixed zlib requirement bug

vcf2aln version 0.11.3

Compatible with deletions encoded by *
Code improvements to array summation

vcf2aln version 0.11.2

Bug fixes

• Fixed bug that caused split regions to overwrite each other
• Fixed bug that caused haploid missing data to be miscounted for minimum calls filter

vcf2aln version 0.11.1

Added method fix_name to resolve reserved characters in locus names