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OceanColor

OceanColor #254

Workflow file for this run

name: OceanColor
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
schedule:
- cron: "7 18 * * 0"
jobs:
build:
runs-on: ubuntu-latest
strategy:
max-parallel: 1
matrix:
python-version: ["3.9", "3.10", "3.11"]
steps:
- name: Install System requirements
run: |
sudo apt-get update
sudo apt-get install -y libhdf5-dev libnetcdf-dev
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Cache pip
uses: actions/cache@v3
with:
path: ~/.cache/pip
key: ${{ runner.os }}-${{ matrix.python-version }}-pip-${{ hashFiles('**/pyproject.toml') }}
restore-keys: |
${{ runner.os }}-${{ matrix.python-version }}-pip-
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install flake8 pytest
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
pip install -e .[dev,parallel,s3]
- name: Cache sample data
id: cache-samples
uses: actions/cache@v3
with:
path: |
MODIS-Aqua/L3m/2017/01/12/AQUA_MODIS.20170112.L3m.DAY.CHL.chlor_a.4km.nc
MODIS-Aqua/L2/2016/08/31/AQUA_MODIS.20160831T221001.L2.OC.nc
MODIS-Aqua/L2/2016/09/01/AQUA_MODIS.20160901T211500.L2.OC.nc
MODIS-Aqua/L2/2017/01/12/AQUA_MODIS.20170112T213500.L2.OC.nc
MODIS-Terra/L3m/2004/01/06/TERRA_MODIS.20040106.L3m.DAY.CHL.chlor_a.4km.nc
VIIRS-SNPP/L2/2017/01/13/SNPP_VIIRS.20170113T002400.L2.OC.nc
key: ${{ runner.os }}-CHL
- name: Test with pytest
run: |
pytest -v tests
env:
NASA_USERNAME: ${{ secrets.NASA_USERNAME }}
NASA_PASSWORD: ${{ secrets.NASA_PASSWORD }}