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is_primary_data review & revision
curation
Updates to published datasets
#1092
opened Nov 6, 2024 by
jahilton
8 of 10 tasks
Draft Microcebus murinus (gray mouse lemur)
drafting
drafting schema for species
multispecies discovery
Adding new species to CELLxGENE
schema
CELLxGENE Discover dataset schema
#1091
opened Nov 5, 2024 by
brianraymor
cellxgene-schema CLI is not correctly enforcing obs['is_primary_data']
bug
Something isn't working
curation software
dp
Data Platform Team work
#1076
opened Oct 30, 2024 by
brianraymor
Address datasets with orthologous gene references
multispecies discovery
Adding new species to CELLxGENE
schema
CELLxGENE Discover dataset schema
#1074
opened Oct 28, 2024 by
brianraymor
Discovery for Productionalizing Multi-Species Validator
Epic
#1058
opened Oct 22, 2024 by
nayib-jose-gloria
Consider if the COG builder should only parse for certain subtrees of ontologies that CxG cares about
P2
#1057
opened Oct 22, 2024 by
nayib-jose-gloria
Investigate installing COG with only ontologies users are interested in
P2
#1056
opened Oct 22, 2024 by
nayib-jose-gloria
Investigate integrating a more flexible, established third-party validation tool
P1
#1055
opened Oct 22, 2024 by
nayib-jose-gloria
Dataset MUST NOT contain duplicate obs, by raw counts
5.4
Next minor CELLxGENE schema version after 5.3
schema
CELLxGENE Discover dataset schema
#1037
opened Oct 17, 2024 by
jahilton
Draft "General species" requirements
multispecies discovery
Adding new species to CELLxGENE
schema
CELLxGENE Discover dataset schema
#1036
opened Oct 15, 2024 by
brianraymor
Evolve development_stage_ontology_term_id to support multiple species
multispecies discovery
Adding new species to CELLxGENE
schema
CELLxGENE Discover dataset schema
#1033
opened Oct 10, 2024 by
brianraymor
small dev_stage recommended updates
schema
CELLxGENE Discover dataset schema
#1031
opened Oct 7, 2024 by
jahilton
Draft relaxed schema compliance
discovery
schema
CELLxGENE Discover dataset schema
#1025
opened Sep 27, 2024 by
brianraymor
ontology updates w/ 5.3.0
5.3
Next minor CELLxGENE schema version after 5.2
curation
Updates to published datasets
#1023
opened Sep 26, 2024 by
jahilton
Require CSR encoding in X (Matrix Layers)
5.3
Next minor CELLxGENE schema version after 5.2
schema
CELLxGENE Discover dataset schema
#1022
opened Sep 25, 2024 by
brianraymor
Draft Caenorhabditis elegans
in review
reviewing schema for species
multispecies discovery
Adding new species to CELLxGENE
schema
CELLxGENE Discover dataset schema
#1020
opened Sep 25, 2024 by
brianraymor
Draft Xenopus laevis (African clawed frog) and Xenopus tropicalis (tropical clawed frog)
in review
reviewing schema for species
multispecies discovery
Adding new species to CELLxGENE
schema
CELLxGENE Discover dataset schema
#1019
opened Sep 25, 2024 by
brianraymor
Draft Callithrix jacchus (white-tufted-ear marmoset)
in review
reviewing schema for species
multispecies discovery
Adding new species to CELLxGENE
schema
CELLxGENE Discover dataset schema
#1018
opened Sep 25, 2024 by
brianraymor
Draft Rattus norvegicus (Norway rat)
in review
reviewing schema for species
multispecies discovery
Adding new species to CELLxGENE
schema
CELLxGENE Discover dataset schema
#1017
opened Sep 25, 2024 by
brianraymor
Draft Macaca fascicularis (crab-eating macaque) and Macaca mulatta (Rhesus macaque)
in review
reviewing schema for species
multispecies discovery
Adding new species to CELLxGENE
schema
CELLxGENE Discover dataset schema
#1015
opened Sep 25, 2024 by
brianraymor
Draft Ambystoma mexicanum (axolotl)
in review
reviewing schema for species
multispecies discovery
Adding new species to CELLxGENE
schema
CELLxGENE Discover dataset schema
#1014
opened Sep 25, 2024 by
brianraymor
Add requirements for 10X multiome
discovery
schema
CELLxGENE Discover dataset schema
#1013
opened Sep 24, 2024 by
brianraymor
Add UBERON bridge between species-specific and taxon-neutral ontology terms
multispecies discovery
Adding new species to CELLxGENE
schema
CELLxGENE Discover dataset schema
#1003
opened Sep 3, 2024 by
brianraymor
Add CL bridge between species-specific and taxon-neutral ontology terms
multispecies discovery
Adding new species to CELLxGENE
schema
CELLxGENE Discover dataset schema
#1002
opened Sep 3, 2024 by
brianraymor
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