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Changed nucmer to snippy for assembled genomes#106

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mayee123 wants to merge 2 commits intodev_cleanupfrom
variant_replace_nucmer
Open

Changed nucmer to snippy for assembled genomes#106
mayee123 wants to merge 2 commits intodev_cleanupfrom
variant_replace_nucmer

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@mayee123 mayee123 commented Dec 17, 2025

Replaced nucmer with snippy

Copied snippy module as a local module in order to supply contigs

Updated variant calling and variant detection subworkflow and modules.config

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