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Np2

Np2 #185

Workflow file for this run

name: Planemo
on: [push, pull_request]
env:
GALAXY_BRANCH: release_24.1
defaults:
run:
shell: bash -l {0}
jobs:
planemo_test:
name: Planemo test
runs-on: ubuntu-latest
strategy:
matrix:
chunk: [1, 2, 3]
steps:
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v3
with:
miniconda-version: "latest"
auto-activate-base: true
python-version: "3.12"
- name: get samtools
run: |
conda install -c conda-forge -c bioconda samtools
- name: pip install
run: |
pip install .[actions]
- name: planemo
run: |
./.planemo.sh ${{ matrix.chunk }} ${{ env.GALAXY_BRANCH }}
- uses: actions/upload-artifact@v4
with:
name: 'Tool test output ${{ matrix.chunk }}'
path: upload
planemo_combine_outputs:
name: Combine chunked test results
needs: planemo_test
runs-on: ubuntu-latest
steps:
- uses: actions/download-artifact@v4
with:
path: artifacts
- name: Combine outputs
uses: galaxyproject/planemo-ci-action@v1
id: combine
with:
mode: combine
html-report: true
- uses: actions/upload-artifact@v4
with:
name: 'All tool test results'
path: upload
- name: Check outputs
uses: galaxyproject/planemo-ci-action@v1
id: check
with:
mode: check