Issues

• Upstream nodes of the KD node significantly change the mRNA abundance

  dynverse/dyngen#65 · Filter by author cyclopenta opened on Apr 14, 2026

• Possible bug in sampling target subnetwork

  dynverse/dyngen#64 · Filter by author jamesLJ100 opened on Mar 20, 2026

• dplyr 1.2.0

  dynverse/dyngen#62 · Filter by author DavisVaughan opened on Jan 29, 2026

• What is the ground truth for the dyngen data.

  dynverse/dyngen#61 · Filter by author cakeinspace opened on Aug 20, 2025

• Disconnected backbones with no common modules

  dynverse/dyngen#60 · Filter by author claracanavese opened on Nov 5, 2024

• Gengerating data with high level of noise to make the cells more dispersed after dimensionality reduction.

  dynverse/dyngen#59 · Filter by author zxcaden opened on Jul 4, 2024

• How can I generate data with a high dimensional normal distribution?

  dynverse/dyngen#58 · Filter by author caodudu opened on May 20, 2024

• Incompatible Tibble sizes when generating knockdown model

  dynverse/dyngen#56 · Filter by author YinoZ opened on Nov 15, 2023

• Prepare for upcoming Seurat v5 release

  dynverse/dyngen#55 · Filter by author Gesmira opened on Oct 3, 2023
  2

• Method to concatenate two models with different trajectories

  dynverse/dyngen#54 · Filter by author XiaPoppy opened on Jun 27, 2023

• Any possibility for adjustment of batch strength during batch effect simulation?

  dynverse/dyngen#53 · Filter by author XiaPoppy opened on Jun 27, 2023

• Ground truth expression trends for mol_mrna in different cell lineages

  dynverse/dyngen#51 · Filter by author spriyansh opened on Nov 15, 2022
  1

• generate_cells error in vectbl_as_row_location()

  dynverse/dyngen#47 · Filter by author cameronraysmith opened on Sep 29, 2022

• Simultaneously knockout multiple genes

  dynverse/dyngen#45 · Filter by author masastat opened on Sep 2, 2022

• x or y has vectors with zero standard deviation; consider setting use_nan = TRUE

  dynverse/dyngen#44 · Filter by author Pinolinoo opened on Aug 29, 2022
  5

• Issue Running generate_dataset()

  dynverse/dyngen#43 · Filter by author Pinolinoo opened on Aug 29, 2022
  2

• Cholmod error 'problem too large' after cell simulation

  dynverse/dyngen#42 · Filter by author christinedien opened on Feb 10, 2022

• rstudio crashes when running dyngen

  dynverse/dyngen#41 · Filter by author Pinolinoo opened on Feb 9, 2022

• Correlation of cells between datasets with different kinetics

  dynverse/dyngen#40 · Filter by author No2Ross opened on Feb 2, 2022

• Questions about differential expressed genes

  dynverse/dyngen#39 · Filter by author hiuchi opened on Dec 29, 2021

• kinetics_noise_none()

  dynverse/dyngen#37 · Filter by author lila167 opened on Nov 29, 2021
  2

• function 'Rcpp_precious_remove' not provided by package 'Rcpp

  dynverse/dyngen#36 · Filter by author lila167 opened on Nov 9, 2021
  2