Release 0.4.0 #65

JPXKQX · 2024-10-22T13:44:04Z

Merge develop to main and release 0.4

Waiting for these PRs:

Optional but nice to include:

Documentation: Limited Area Modeling #42

📚 Documentation preview 📚: https://anemoi-graphs--65.org.readthedocs.build/en/65/

* Global Encoder-Processor-Decoder graph (#9) * feat: Initial implementation of global graphs + fixes Co-authored by: Mario Santa Cruz <[email protected]> Co-authored-by: Helen Theissen <[email protected]> Co-authored-by: Sara Hahner <[email protected]> Co-authored-by: Jesper Dramsch <[email protected]> * fix: attributes as torch.float32 * new test: attributes must be float32 * fix typo * Homogeneize base builders * improve test docstrings * homogeneize (name as class attribute) * new input config * new default * remove dataclass from attribute classes

Hotfix: nodes config name Co-authored-by: Helen Theissen <[email protected]> Co-authored-by: Jesper Dramsch <[email protected]>

* Global Encoder-Processor-Decoder graph (#9) * feat: Initial implementation of global graphs Co-authored by: Mario Santa Cruz <[email protected]> Co-authored-by: Helen Theissen <[email protected]> Co-authored-by: Jesper Dramsch <[email protected]> * fix: attributes as torch.float32 * new test: attributes must be float32 * fix typo * Homogeneize base builders * improve test docstrings * homogeneize (name as class attribute) * new input config * new default * feat: Initial implementation of global graphs Co-authored by: Mario Santa Cruz <[email protected]> * add cli command * Ignore .pt files * run pre-commit * docstring + log erros * initial tests * feat: initial version of AttributeBuilder * refactor: separate into node edge attribute builders * feat: edge_length moved to edges/attributes.py * remove __init__ * bugfix (encoder edge lengths) + refector * feat: support path and dict for `config` argument * fix: error * refactor: naming * fix: pre-commit * feat: builders icosahedral * feat: Add icosahedral graph generation Co-authored-by: Mario Santa Cruz <[email protected]> * refactor: remove create_shere * feat: Icosahedral edge builder * feat: hexagonal graph generation Co-authored-by: Mario Santa Cruz <[email protected]> * feat: hexagonal builders * fix: AOI not implemented yet * fix: abstractmethod and renaming * chore: add dependencies * test: add tests for trimesh * test: add tests for hex (h3) * fix: imports * fix: output type * refactor: delete unused file * refactor: renaming and positioning * feat: ensure src and dst always the same * fix: imports * fix: edge_name not supported * test: add tests for TriIcosahedralEdges * fix: assert missing for Hexagonal edges * test: hexagonal edges * fix: avoid same name * fix: imports * fix: conflicts * update tests * Include xhops to hexagonal edges * docs: update docstrings * fix: update attribute name * refactor: rename multiscale nodes * refactor: rename icosahedral nodes * improve: clarity of function * improve: function syntax * refactor: simplify resolution assignment * refactor: improve variable naming in icosahedral graph generation * more comments * refactor: naming * refactor: separate into functions * refactor: remove unused code * refactor: remove unused options and rename * doc: clarify cells and nodes * fix: add return statements * homogeneize: tri & hex edges * naming: xhops to x_hops * naming: x_hops in docstring * docstring * blank lines * fix: add return statement * simplify icoshaedral edges * feat: select edge builder method based on ico node type * test: adjust tests to new MultiScaleEdges * docs: improve docstrings * fix: remove LAM filtering for icosahedral, leave for next PR * h3 (v4) not supported ---------

* ci: changelog check * feat: add changelog * fix: on develop

* feat: clean graph of unneeded attributes after creation Co-authored-by: Mario Santa Cruz <[email protected]> Co-authored-by: Helen Theissen <[email protected]> Co-authored-by: Jesper Dramsch <[email protected]>

* hotfix: make graph saving optional Co-authored-by: Jesper Dramsch <[email protected]> Co-authored-by: Mario Santa Cruz <[email protected]> Co-authored-by: Helen Theissen <[email protected]>

Co-authored-by: Jesper Dramsch <[email protected]>

[feature] HEALPix node builder Co-authored-by: theissenhelen <[email protected]>

* ci: add public pr label * ci: add downstream-ci workflow * ci: add ci-config * fix: pre-commit * docs: update changelog * ci: switch main on downstream-ci * ci: run ci on push on main

* Add binary dependencies to ci-config.yml * docs: update changelog --------- Co-authored-by: theissenhelen <[email protected]>

* ci: inherit pypi publish flow Co-authored-by: Jesper Dramsch <[email protected]> * docs: update changelog * ci: only downstream-ci for changes in src and tests --------- Co-authored-by: Jesper Dramsch <[email protected]>

* #31 Ensure lat lon values passed as numpy arrays * fix formatting * Updated CHANGELOG.md

* fix: remove the bug in the graph cleaning function Co-authored-by: Jesper Dramsch <[email protected]> * docs: update changelog --------- Co-authored-by: Jesper Dramsch <[email protected]> Co-authored-by: Gert Mertes <[email protected]>

* ci: move to reusable workflows for QA and Testing * docs: changelog add ci reusable workflow * ci: downstream ci ignore docs * ci: remove anchor, unsupported by github

* ci: add pull-requests permissions * ci: add on workflow dispatch

* ci: remove 3.9 tests * ci: remove testing of python 3.9 * dics: update changelog

* fix: support py3.9 Co-authored-by: Jesper Dramsch <[email protected]> * fix: update & homogeneize changelog * fix: update tests to support py39 * fix: style * ci: rollback 3.9 tests * refactor: annotations not used in tests --------- Co-authored-by: Jesper Dramsch <[email protected]>

* ci: avoid duplication of release notes * ci: try write-all * ci: fix permissions * docs: update changelog * ci: fix indent

* [create-pull-request] automated change * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: theissenhelen <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* fix: change pre-cmmit autoupdate scheule to monthly * fix: change the merge strategy for Changelog to Union * ci: fix downstream-ci-hpc workflow call * fix: add .envrc to .gitignore * ci: ignore pre-commit-config and readthedocs for changelog updates * fix: update precommit config * chore: update pre-commit * feat: add codeowners for workflow files * chore: update pyproject.toml all * fix: formatting * ci: add hpc config * docs: update changelog * docs: fix docstrings * ci: remove notebook pytest --------- Co-authored-by: Jesper Dramsch <[email protected]>

Limited Area graphs Co-authored-by: Helen Theissen <[email protected]> Co-authored-by: Jesper Dramsch <[email protected]>

* add link to transform

* [pre-commit.ci] pre-commit autoupdate

Update CODEOWNERS

Co-authored-by: Mario Santa Cruz <[email protected]>

for more information, see https://pre-commit.ci

* bugfix * update changelog

* support for stretched graphs Co-authored-by: Helen Theissen <[email protected]> Co-authored-by: Jesper Dramsch <[email protected]>

FussyDuck · 2024-10-22T13:44:11Z

Thank you for your submission! We really appreciate it. Like many open source projects, we ask that you all sign our Contributor License Agreement before we can accept your contribution.
9 out of 10 committers have signed the CLA.

✅ theissenhelen
✅ JPXKQX
✅ gmertes
✅ Rilwan-Adewoyin
✅ JesperDramsch
✅ b8raoult
✅ mchantry
✅ mpvginde
✅ HCookie
❌ iainrussell
_{You have signed the CLA already but the status is still pending? Let us recheck it.}

* ci: extend python versions

* feat: refactor GraphCreator

- Use standard try-except

Fix __version__ import

Fix pre-commit regex

* Add contributors * fix: update changelog --------- Co-authored-by: Mario Santa Cruz <[email protected]>

* feat: set hidden attributes as class attribute * feat: remove CutOutZarrDatasetNodes * feat: update test * fix: tests * featL update changelog.md * feat: expand node attributes (and) * fix: rename n -> num * fix: update Nonmissing * fix: remove ds * fix: tests

JPXKQX and others added 30 commits July 8, 2024 14:51

Merge branch 'develop' of github.com:ecmwf/anemoi-graphs into develop

1c8f8a8

fix: config nodes name

6451902

Merge pull request #14 from ecmwf/hotfix/config_node_name

5b3bbe1

Hotfix: nodes config name Co-authored-by: Helen Theissen <[email protected]> Co-authored-by: Jesper Dramsch <[email protected]>

[feature] add changelog (#21)

db2d327

* ci: changelog check * feat: add changelog * fix: on develop

Skip no-commit-to-branch in code QA (#17)

d510eb2

Clean nodes after building the graph (#23)

7fd9c74

* feat: clean graph of unneeded attributes after creation Co-authored-by: Mario Santa Cruz <[email protected]> Co-authored-by: Helen Theissen <[email protected]> Co-authored-by: Jesper Dramsch <[email protected]>

Make graph filename argument optional (#24)

04e54ae

* hotfix: make graph saving optional Co-authored-by: Jesper Dramsch <[email protected]> Co-authored-by: Mario Santa Cruz <[email protected]> Co-authored-by: Helen Theissen <[email protected]>

doc: update CHANGELOG

f383756

Co-authored-by: Jesper Dramsch <[email protected]>

chore: add rtd pr preview

eabb8f1

HEALPix nodes (#16)

bfdac7d

[feature] HEALPix node builder Co-authored-by: theissenhelen <[email protected]>

25 integrate reusable workflows (#26)

863c489

* ci: add public pr label * ci: add downstream-ci workflow * ci: add ci-config * fix: pre-commit * docs: update changelog * ci: switch main on downstream-ci * ci: run ci on push on main

Hotfix/clean graph (#28)

d1a3298

Add binary dependencies to ci-config.yml (#29)

efac52a

* Add binary dependencies to ci-config.yml * docs: update changelog --------- Co-authored-by: theissenhelen <[email protected]>

ci: inherit pypi publish flow (#27)

3d8b1ea

* ci: inherit pypi publish flow Co-authored-by: Jesper Dramsch <[email protected]> * docs: update changelog * ci: only downstream-ci for changes in src and tests --------- Co-authored-by: Jesper Dramsch <[email protected]>

Bugfix/31 ensure latlon input numpy array (#32)

20e21ff

* #31 Ensure lat lon values passed as numpy arrays * fix formatting * Updated CHANGELOG.md

Remove bug in the graph cleaning function (#33)

80f0014

* fix: remove the bug in the graph cleaning function Co-authored-by: Jesper Dramsch <[email protected]> * docs: update changelog --------- Co-authored-by: Jesper Dramsch <[email protected]> Co-authored-by: Gert Mertes <[email protected]>

Move to reusable workflows for QA and Testing (#34)

fadddd7

* ci: move to reusable workflows for QA and Testing * docs: changelog add ci reusable workflow * ci: downstream ci ignore docs * ci: remove anchor, unsupported by github

ci: add changelog release updater (#35)

95e144b

ci: changelog updater PR (#36)

61ee1b4

ci: correct inputs typo

2ebd296

ci: fix changelog updater

69c83c0

docs: ci fixes changelog

261c82d

ci: premissions

a76c0f8

ci: typo

687e9dc

Ci/fix pr permission (#37)

76aed29

* ci: add pull-requests permissions * ci: add on workflow dispatch

ci: remove 3.9 tests (#39)

a48a21b

* ci: remove 3.9 tests * ci: remove testing of python 3.9 * dics: update changelog

Ci/fix_double_notes (#40)

31f3bdc

* ci: avoid duplication of release notes * ci: try write-all * ci: fix permissions * docs: update changelog * ci: fix indent

github-actions bot and others added 14 commits September 3, 2024 13:07

fix: triggering event in QA

7a35e10

Local Area graphs (#30)

986ee9e

Limited Area graphs Co-authored-by: Helen Theissen <[email protected]> Co-authored-by: Jesper Dramsch <[email protected]>

add link to transform (#59)

529035b

* add link to transform

Update CODEOWNERS

04666b9

[pre-commit.ci] pre-commit autoupdate (#55)

6debe81

* [pre-commit.ci] pre-commit autoupdate

Merge pull request #61 from ecmwf/update/codeowners

80f1de3

Update CODEOWNERS

Update .pre-commit-config.yaml (#58)

29510cb

Co-authored-by: Mario Santa Cruz <[email protected]>

Fix pre-commit regex

e3797b9

[pre-commit.ci] auto fixes from pre-commit.com hooks

f1bd2c6

for more information, see https://pre-commit.ci

[bugfix] color when plotting isolated nodes (#63)

8ad4463

* bugfix * update changelog

[feature] Stretched graphs (#51)

aecb1ca

* support for stretched graphs Co-authored-by: Helen Theissen <[email protected]> Co-authored-by: Jesper Dramsch <[email protected]>

Merge branch 'develop' into bugfix/pre-commit-regex

aaa2545

JPXKQX self-assigned this Oct 22, 2024

JPXKQX marked this pull request as draft October 22, 2024 14:46

theissenhelen and others added 11 commits October 22, 2024 16:12

Ci/pin python versions (#66)

235c1e9

* ci: extend python versions

Refactor GraphCreator (#60)

ba41fdb

* feat: refactor GraphCreator

Merge branch 'develop' into bugfix/pre-commit-regex

78d34c5

Update copyright notice (#67)

959dff0

Merge branch 'develop' into bugfix/pre-commit-regex

90a6a82

Fix __version__ import

d374a57

- Use standard try-except

Merge pull request #69 from ecmwf/fix/init-version-import

7427324

Fix __version__ import

Merge branch 'develop' into bugfix/pre-commit-regex

569cbc3

Merge pull request #64 from ecmwf/bugfix/pre-commit-regex

d48ac7b

Fix pre-commit regex

Add contributors (#72)

af6a840

* Add contributors * fix: update changelog --------- Co-authored-by: Mario Santa Cruz <[email protected]>

JPXKQX marked this pull request as ready for review October 29, 2024 13:39

gmertes merged commit 1fd0163 into main Nov 8, 2024
113 of 116 checks passed

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Release 0.4.0 #65

Release 0.4.0 #65

JPXKQX commented Oct 22, 2024 •

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Release 0.4.0 #65

Release 0.4.0 #65

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