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@etetoolkit

ETE Toolkit

A Python framework for the analysis and visualization of trees.

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  1. ete ete Public

    Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …

    Python 818 217

  2. cookbook cookbook Public

    HTML 18 9

  3. course course Public

    Jupyter Notebook 12 9

  4. treematcher treematcher Public

    Search flexible patterns within tree structures using regular expression like syntax.

    Python 9 13

  5. pmodeltest pmodeltest Public

    Python implementation of modeltest/prottest supporting proteins and nucleotides (can be run in parallel).

    Python 5 5

  6. ext_apps ext_apps Public

    A compilation of external software used by ETE

    C 4 6

Repositories

Showing 10 of 15 repositories
  • ete Public

    Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

    Python 818 GPL-3.0 217 224 7 Updated Mar 21, 2025
  • ete-gallery Public

    Examples of use of the ETE Toolkit

    Python 0 0 0 0 Updated Feb 11, 2025
  • ete4 Public
    Python 0 GPL-3.0 0 0 0 Updated Feb 3, 2025
  • ete-data Public

    Data files to use with the ETE Toolkit

    Python 0 GPL-3.0 1 0 1 Updated Jul 3, 2024
  • ete4_apps Public

    command line applications based on ete4

    HTML 0 0 0 0 Updated Dec 7, 2021
  • course Public
    Jupyter Notebook 12 9 0 0 Updated Sep 1, 2020
  • webplugin Public

    Experiments for a new webplugin module (examples for phylotastic.org project )

    Python 4 4 1 1 Updated May 19, 2020
  • pmodeltest Public

    Python implementation of modeltest/prottest supporting proteins and nucleotides (can be run in parallel).

    Python 5 5 2 0 Updated Feb 26, 2020
  • logicali Public
    Python 0 GPL-3.0 1 0 0 Updated May 28, 2018
  • etetoolkit_GSoC Public
    0 0 0 0 Updated Jan 23, 2018
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