Skip to content

Curated the list of tools for the biodiversity community#337

Closed
adluinf wants to merge 5 commits intogalaxyproject:mainfrom
adluinf:for-curated-tools
Closed

Curated the list of tools for the biodiversity community#337
adluinf wants to merge 5 commits intogalaxyproject:mainfrom
adluinf:for-curated-tools

Conversation

@adluinf
Copy link

@adluinf adluinf commented Apr 1, 2025

I hope that the discrepancy from the previous pull request is now fixed.
( Curated tools for the biodiversity community #328 )

This version is based on a review of the tools at Galaxy Code Fest 2024

It contains the common subset of the tools listed in the files of curated tools and the automatically generated tool_status.tsv.

We will update this file with the remaining curated tools as soon as possible.

adluinf and others added 5 commits March 6, 2025 17:22
This version is based on a review of the tools at (Galaxy Code Fest 2020)[https://docs.google.com/presentation/d/1uAgjha2Tqz0esolcu46xP89Jv43k3Edg4r4n4SBfHfE/edit#slide=id.g2e8d05ba6e2_0_13]


Co-Authored-By: Marie59 <Marie59@users.noreply.github.com>
Co-Authored-By: paige-kulzer <paige-kulzer@users.noreply.github.com>
Co-Authored-By: VetrovskyTomas <VetrovskyTomas@users.noreply.github.com>
Co-Authored-By: drielliC <drielliC@users.noreply.github.com>
Co-Authored-By: steninidak <steninidak@users.noreply.github.com>
Co-Authored-By: matuskalas <matuskalas@users.noreply.github.com>
Remove this file which should be generated when the tool_status.tsv is updated.
This version is based on a review of the tools at Galaxy Code Fest 2024.
Curated tools for the biodiversity community (2)
@paulzierep
Copy link
Collaborator

I think we can merge this ... you can still update later.

@scorreard
Copy link
Collaborator

scorreard commented May 13, 2025

Hi @adluinf,
My understanding is that the only info that should be changed in the tool_status.tsv file are the columns To keep and deprecated.
If the tool is relevant for biodiversity, the "To keep" column should say TRUE, if the tool is no longer used or not relevant, the "deprecated" column should say TRUE.
Once this is done, it will automatically create a curated_tools.tsv file

I am happy to support with that or lead this step if you want, let me know :)

@adluinf
Copy link
Author

adluinf commented Jun 17, 2025

Thank you for the clarifications.
Given the recently merged PRs this is not relevant anymore.

@adluinf adluinf closed this Jun 17, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants