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@giovannellilab

Giovannelli Lab

Giovannelli Lab at the University of Naples Federico II

Welcome to the GitHub page of the Giovannelli Lab! 👋👋


My group aims to explore and understand the emergence and evolution of life and the co-evolution of the Geosphere and the Biosphere.

Our current work lays at the interface between microbial ecology, microbial evolution and geochemistry. We integrate classic microbiology techniques with cutting-the-edge molecular and computational tools in order to investigate the role of microbes in shaping the environment, their interactions with abiotic factors and the drivers of evolution and adaptation.

More details on the following link: https://www.donatogiovannelli.com/

Popular repositories Loading

  1. Geomosaic Geomosaic Public

    A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis

    Python 4 1

  2. giovannellilab.github.io giovannellilab.github.io Public

    Book for documentation, tutorial and protocols of the Giovannelli Lab.

    TeX 1

  3. biometal_transporters biometal_transporters Public

    Environmental diversity, distribution and evolution of microbial metal ion transport systems

    Shell 1

  4. Basili_et_al_Central_America_Convergent_Margin Basili_et_al_Central_America_Convergent_Margin Public

    Repository containing the data relative to the paper "Shifts in subsurface microbial community structure along the geological features of the Central American Volcanic Arc"

    Jupyter Notebook 1

  5. esa-hackathon esa-hackathon Public

    Repository for the ESA Space Omics Hackathon

    Jupyter Notebook 1

  6. giovannellilab_protocols giovannellilab_protocols Public

    Protocols used in the Giovannelli Lab

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Repositories

Showing 10 of 43 repositories
  • ena-submission Public

    Compilation of utilities for the ENA submission

    giovannellilab/ena-submission’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Feb 17, 2025
  • esa-hackathon Public

    Repository for the ESA Space Omics Hackathon

    giovannellilab/esa-hackathon’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 2 0 Updated Feb 16, 2025
  • pipeline-hmm Public

    Pipeline for generating HMM profiles and functionally annotating with them.

    giovannellilab/pipeline-hmm’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 1 0 Updated Feb 14, 2025
  • Geomosaic Public

    A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis

    giovannellilab/Geomosaic’s past year of commit activity
    Python 4 CC-BY-SA-4.0 1 0 0 Updated Feb 6, 2025
  • Ecoli_trace_metal_metabolic_shift Public

    Data from the E. coli trace metal availability experiment controlling metabolic shifts

    giovannellilab/Ecoli_trace_metal_metabolic_shift’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 29, 2025
  • geochem Public

    Geochemistry pipeline for processing and visualising data from IRMS, IC and ICP-MS

    giovannellilab/geochem’s past year of commit activity
    R 0 0 11 (4 issues need help) 0 Updated Jan 28, 2025
  • subcarb Public

    Website and repository of the MSCA Subcarb project

    giovannellilab/subcarb’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jan 27, 2025
  • Extreme_microbiology_book Public

    Repository for the Microbiology of Extreme Environments textbook

    giovannellilab/Extreme_microbiology_book’s past year of commit activity
    Jupyter Notebook 0 CC-BY-4.0 0 0 0 Updated Jan 23, 2025
  • media-prediction Public

    Prediction of media requirements for microbial species

    giovannellilab/media-prediction’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 7 0 Updated Jan 18, 2025
  • Selci_et_al_Origin_and_fate_of_methane Public

    Data and code relative to the Selci et al manuscript discussing the origin and fate of methane in convergent margins

    giovannellilab/Selci_et_al_Origin_and_fate_of_methane’s past year of commit activity
    R 0 0 0 0 Updated Jan 9, 2025

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