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fix: problem in issues #810 #860

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fix: problem in issues #810 #860

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f01cd40
Update run_docker.py
Atomuboot Nov 17, 2023
42b199b
Update download_uniref30.sh
Atomuboot Nov 17, 2023
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2 changes: 1 addition & 1 deletion docker/run_docker.py
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Original file line number Diff line number Diff line change
Expand Up @@ -149,7 +149,7 @@ def main(argv):

# Path to the Uniref30 database for use by HHblits.
uniref30_database_path = os.path.join(
FLAGS.data_dir, 'uniref30', 'UniRef30_2021_03')
FLAGS.data_dir, 'uniref30', 'UniRef30_2023_02')

# Path to the PDB70 database for use by HHsearch.
pdb70_database_path = os.path.join(FLAGS.data_dir, 'pdb70', 'pdb70')
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3 changes: 2 additions & 1 deletion scripts/download_uniref30.sh
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Expand Up @@ -33,7 +33,8 @@ DOWNLOAD_DIR="$1"
ROOT_DIR="${DOWNLOAD_DIR}/uniref30"
# Mirror of:
# https://wwwuser.gwdg.de/~compbiol/uniclust/2021_03/UniRef30_2021_03.tar.gz
SOURCE_URL="https://storage.googleapis.com/alphafold-databases/v2.3/UniRef30_2021_03.tar.gz"
# SOURCE_URL="https://storage.googleapis.com/alphafold-databases/v2.3/UniRef30_2021_03.tar.gz"
SOURCE_URL="https://wwwuser.gwdg.de/~compbiol/uniclust/2023_02/UniRef30_2023_02_hhsuite.tar.gz
BASENAME=$(basename "${SOURCE_URL}")

mkdir --parents "${ROOT_DIR}"
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