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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 821 162

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 179 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 337 59

  4. vizarr vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 186 38

  5. CHIEF CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    Python 689 115

Repositories

Showing 10 of 389 repositories
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend’s past year of commit activity
    TypeScript 1 Apache-2.0 1 0 10 Updated Mar 6, 2026
  • udi-chat Public

    For experimenting with chat based interface for the Universal Discovery Interface.

    hms-dbmi/udi-chat’s past year of commit activity
    Vue 0 MIT 1 5 15 Updated Mar 6, 2026
  • pic-sure-bdc-infrastructure Public
    hms-dbmi/pic-sure-bdc-infrastructure’s past year of commit activity
    HCL 5 Apache-2.0 1 0 4 Updated Mar 6, 2026
  • UDIAgent Public Forked from mims-harvard/TxAgent

    UDIAgent: Inference for generating visualizations from natural language prompts

    hms-dbmi/UDIAgent’s past year of commit activity
    Python 0 MIT 96 7 1 Updated Mar 6, 2026
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 5 1 4 Updated Mar 6, 2026
  • avillachlab-jenkins Public
    hms-dbmi/avillachlab-jenkins’s past year of commit activity
    HCL 5 Apache-2.0 6 0 1 Updated Mar 6, 2026
  • DQVis-Generation Public

    code for generating training data used for fine-tuning the LLM

    hms-dbmi/DQVis-Generation’s past year of commit activity
    Jupyter Notebook 4 MIT 4 0 12 Updated Mar 6, 2026
  • pic-sure-bdc-release-control Public
    hms-dbmi/pic-sure-bdc-release-control’s past year of commit activity
    1 Apache-2.0 8 0 0 Updated Mar 6, 2026
  • ETLToolSuite-EntityGenerator Public

    This tool will generate Entity Files that can be used to load into Datasources.

    hms-dbmi/ETLToolSuite-EntityGenerator’s past year of commit activity
    Java 0 Apache-2.0 0 0 3 Updated Mar 6, 2026
  • gehlenborglab-website Public

    Code for HIDIVE Lab website.

    hms-dbmi/gehlenborglab-website’s past year of commit activity
    TypeScript 10 MIT 41 12 6 Updated Mar 6, 2026
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