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Add Hessian eigenvalues#29

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hanslovsky wants to merge 43 commits intoimglib:masterimglib/imglib2-algorithm:masterfrom

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Commits on Aug 3, 2016

• added first version of hessian eigenvalues

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• implemented copy method

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• Changes to Matrix classes and eigenvalue methods

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• copy() returning deep copy now

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• added methods for passing result RandomAccesisbleIntervals

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Commits on Aug 4, 2016

• Added parallel version for gradient.

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• Use parallel gradient, pass number of threads

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• removed time logs

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• added parrallel option to eigenvalues

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• added author tags (PartialDerivative unclear)

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Commits on Aug 8, 2016

• Merge branch 'master' into hessian-eigenvalues

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• added documentation/comments

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• Add HessianMatrixEigenValuesTest

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• Add test for HessianMatrix (2D and 3D)

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• Remove consistency test for Hessian matrix from HessianMatrixEigenValuesTest

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• Add @tpietzsch as author of PartialDerivative.java

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Commits on Aug 10, 2016

• Merge branch 'master' into hessian-eigenvalues

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• removed e-mails from author tags

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Commits on Feb 16, 2017

• Merge remote-tracking branch 'origin/master' into hessian-eigenvalues

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• Simplify interfaces

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• Rename packages (more appropriately)

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• Use nTasks instead of nThreads

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• Add convenience methods for gaussian smoothing to Hessian matrix

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• Remove number of threads from nTasks JavaDoc

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• Make number of dimensions consistent

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Commits on Feb 22, 2017

• Change EigenValue interface to accept ComplexType

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• Optimize EigenValue and avoid creation of object with every call to compute

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• Remove bounds check for RealCompositeMatrix.getEntry

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• Relax interface for RealCompositeMatrix.data and EigenValue.compute from RealComposite to Composite.

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Commits on Feb 24, 2017

• Add license header.

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• Add convenience method for scaling Hessian according to sigma.

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Commits on Mar 8, 2017

• Add eigenvalue decomposition using ojAlgo

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Commits on Apr 24, 2017

• Merge remote-tracking branch 'origin/master' into hessian-eigenvalues-ojalgo

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• Use ojAlgo instead of commons-math

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• Merge pull request #1 from hanslovsky/hessian-eigenvalues-ojalgo

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• Fix formatting issues

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Commits on May 16, 2017

• Use gradientCentralDifference instead of gradientCentralDifference2

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• Use more concise and readable Util.min over streams.

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• Make constructors with length parameters protected

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• Remove unused import java.util.Arrays

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• Specify linear representation of upper triangular Hessian in JavaDoc

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• Add JavaDoc to HessianMatrix.scaleHessianMatrix

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• Merge branch 'master' of github.com:imglib/imglib2-algorithm into hessian-eigenvalues

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