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How to use Gramtools build based on multiple VCF files?

Status: Open.

#172 In iqbal-lab-org/gramtools;

· cvn001 opened on Sep 8, 2023

install error

Status: Open.

#167 In iqbal-lab-org/gramtools;

· 8banzhuan opened on Jul 21, 2022

Error while running gramtools

Status: Open.

#165 In iqbal-lab-org/gramtools;

· khodor14 opened on Mar 4, 2022

'N' in reference genome fasta not supported

Status: Open.

#156 In iqbal-lab-org/gramtools;

· bricoletc opened on Mar 1, 2021

Pf benchmarking

Status: Open.

#152 In iqbal-lab-org/gramtools;

· bricoletc opened on Oct 27, 2019

Performance cost of kmer-indexing

Status: Open.

#146 In iqbal-lab-org/gramtools;

· iqbal-lab opened on Jun 2, 2019

Reducing index size

enhancement

Status: Open.

#145 In iqbal-lab-org/gramtools;

· bricoletc opened on May 7, 2019

Multi-threading improvements

bug

enhancement

Status: Open.

#144 In iqbal-lab-org/gramtools;

· bricoletc opened on Apr 11, 2019

Build PRG from MSA and more sparsely from VCF

enhancement

Status: Open.

#130 In iqbal-lab-org/gramtools;

· ffranr opened on Jun 7, 2018

Benchmarking basic MHC (8haplos): build and quasimap

benchmark

Status: Open.

#125 In iqbal-lab-org/gramtools;

· iqbal-lab opened on Jun 3, 2018

Release includes pre built backend binaries

enhancement

Status: Open.

#101 In iqbal-lab-org/gramtools;

· ffranr opened on Apr 4, 2018

Systematic decisions to ignore regions of the PRG

help wanted

specification

Status: Open.

#96 In iqbal-lab-org/gramtools;

· iqbal-lab opened on Mar 30, 2018