Preparing release 0.9.1

iqbal-lab-org · May 21, 2021 · 9a9d3fa · 9a9d3fa
1 parent ac6c2de
commit 9a9d3fa
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Showing 4 changed files with 26 additions and 7 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -9,6 +9,16 @@ project adheres to
 
 ## [Unreleased]
 
+## [0.9.1]
+
+### Added
+- `pandora` is now installable through `conda`;
+- A script to archive the `pandora` repository with git submodules;
+
+### Changed
+- Improved the sample example so now we can assert that the output produced is the expected one;
+- Changes to the build process that enables `pandora` to be compiled in the `conda` environment;
+
 ## [0.9.0]
 
 ### Changed
@@ -97,7 +107,8 @@ from this point will have their changes meticulously documented here.
 
 - k-mer coverage underflow bug in `LocalPRG` [[#183][183]]
 
-[Unreleased]: https://github.com/rmcolq/pandora/compare/0.9.0...HEAD
+[Unreleased]: https://github.com/rmcolq/pandora/compare/0.9.1...HEAD
+[0.9.1]: https://github.com/rmcolq/pandora/releases/tag/0.9.1
 [0.9.0]: https://github.com/rmcolq/pandora/releases/tag/0.9.0
 [0.9.0-rc2]: https://github.com/rmcolq/pandora/releases/tag/0.9.0-rc2
 [0.9.0-rc1]: https://github.com/rmcolq/pandora/releases/tag/0.9.0-rc1

diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -12,7 +12,7 @@ HunterGate(
 
 # project configuration
 set(PROJECT_NAME_STR pandora)
-project(${PROJECT_NAME_STR} VERSION "0.9.0" LANGUAGES C CXX)
+project(${PROJECT_NAME_STR} VERSION "0.9.1" LANGUAGES C CXX)
 set(ADDITIONAL_VERSION_LABELS "")
 configure_file( include/version.h.in ${CMAKE_BINARY_DIR}/include/version.h )
 

diff --git a/README.md b/README.md
@@ -17,6 +17,7 @@
 - [Hands-on toy example](#hands-on-toy-example)
 - [Installation](#installation)
   - [Precompiled portable binary](#no-installation-needed---precompiled-portable-binary)
+  - [Conda](#conda)
   - [Containers](#containers)
   - [Installation from source](#installation-from-source)
 - [Usage](#usage)
@@ -78,18 +79,25 @@ In this binary, all libraries are linked statically.
 
 * **Download**:
   ```
-  wget https://github.com/rmcolq/pandora/releases/download/0.9.0/pandora-linux-precompiled-v0.9.0
+  wget https://github.com/rmcolq/pandora/releases/download/0.9.1/pandora-linux-precompiled-v0.9.1
   ```
 
 * **Running**:
 ```
-chmod +x pandora-linux-precompiled-v0.9.0
-./pandora-linux-precompiled-v0.9.0 -h
+chmod +x pandora-linux-precompiled-v0.9.1
+./pandora-linux-precompiled-v0.9.1 -h
 ```
 
 * **Notes**:
   * We provide precompiled binaries for Linux OS only;
 
+### Conda
+
+To install `pandora` through `conda`, run:
+```
+conda install -c bioconda pandora
+```
+
 ### Containers
 
 [![Docker Repository on Quay](https://quay.io/repository/rmcolq/pandora/status "Docker Repository on Quay")](https://quay.io/repository/rmcolq/pandora)

diff --git a/example/run_pandora.sh b/example/run_pandora.sh
@@ -20,8 +20,8 @@ function download_tool {
 # setup tools
 if [ "$#" -eq 0 ] ; then
   # not conda env
-  pandora_URL="https://github.com/rmcolq/pandora/releases/download/0.9.0/pandora-linux-precompiled-v0.9.0"
-  pandora_executable="./pandora-linux-precompiled-v0.9.0"
+  pandora_URL="https://github.com/rmcolq/pandora/releases/download/0.9.1/pandora-linux-precompiled-v0.9.1"
+  pandora_executable="./pandora-linux-precompiled-v0.9.1"
   download_tool "${pandora_URL}" "${pandora_executable}"
 else
   # conda env