various update prior to submission

.Rbuildignore

@@ -2,12 +2,14 @@
 ^\.Rproj\.user$
 cran-comments.md
 figure
-Readme.md
-Readme.rmd
+README.md
+README.rmd
 .travis.yml
-Readme_cache
+README_cache
 ^CRAN-RELEASE$
 ^\.github$
 ^_pkgdown\.yml$
-^docs$
 ^pkgdown$
+^docs
+^docs/*.*
+^docs/*

.gitignore

@@ -20,6 +20,10 @@
 # produced vignettes
 vignettes/*.html
 vignettes/*.pdf
+
+# web files
+docs/*
+
 # doc files
 inst/doc/*
 
@@ -39,4 +43,3 @@ inst/doc/*
 src/*.o
 src/*.so
 src/*.dll
-docs

DESCRIPTION

@@ -15,7 +15,7 @@ Description: Implements an efficient O(n) algorithm based on bucket-sorting for
     include adjusted Rand index (ARI), normalized information distance (NID), 
     normalized mutual information (NMI), adjusted mutual information (AMI), 
     normalized variation information (NVI) and entropy, as described in Vinh et al (2009) 
-    <doi:10.1145/1553374.1553511>. Include EMI (Expected Mutual Information) since version 0.1.2, 
+    <doi:10.1145/1553374.1553511>. Include AMI (Adjusted Mutual Information) since version 0.1.2, 
     a modified version of ARI (MARI) and simple Chi-square distance since version 1.0.0.
 License: GPL (>=3)
 URL: https://github.com/jchiquet/aricode (dev version)

cran-comments.md

@@ -1,25 +1,35 @@
 
 ## Package update
 
-This package uses a bucket-sorting algorithm to avoid useless storage and computations in sparse contingency tables when comparing two classifications with many entries. It is then used to compute fastly adjusted Rand index and other clustering comparison measures.
+This package uses a bucket-sorting algorithm to avoid useless storage and computations in sparse contingency tables when comparing two classifications with many entries. It is then used to compute fastly adjusted Rand index and other clustering comparison measures. In this new version we
 
-I recently added a new measure of clustering comparison (the adjusted mutual information - AMI)
+  -	added the Modified adjusted Rand Index
+  -	added the Chi-Square statistics
+  - fixed bugs
 
 Thank you for your time and work on CRAN.
 
 ## Tested environments
 
-- local ubuntu 18.04 install, R 3.6.0
-- ubuntu 14.04 (on travis-ci), R 3.6.0, oldrelease and R devel
-- Mac OS X (on travis-ci), R 3.6.0 and oldrelease
-- win-builder, R 3.6.0 and R devel
-- Debian (R-hub), R devel
+- macOS 10.13.6 High Sierra, R-release, CRAN's setup (R hub)
+- macOS Catalina 10.15, R-release (github action)
+- macOS Catalina 10.15, R-devel (github action)
+- Linux ubuntu 16.04, R-release (github-action)
+- Linux ubuntu 18.04 R-release, (local)
+- Linux Debian GCC  R-devel, (R hub)
+- Windows Server 2019, R-release (github action)
+- Windows Server 2008 R2 SP1, R-release  (R hub)
+- Windows, R-oldrelease (winbuilder)
+- Windows, R-release (winbuilder)
+- Windows, R-devel  (winbuilder)
+
+all status OK 
 
 ## R CMD check results
 
-── R CMD check results ────────────────────────────────────── aricode 0.1.2 ────
-Duration: 1m 2.8s
+── R CMD check results ────────────────────────────────────── aricode 1.0.0 ────
+Duration: 26.5s
 
-0 errors ✔ | 0 warnings ✔ | 0 notes ✔
+0 errors ✓ | 0 warnings ✓ | 0 notes ✓
 
 R CMD check succeeded