JHU Applied Physics Laboratory Biological Sciences

Popular repositories Loading

1. taxtriage taxtriage Public

   TaxTriage is a Nextflow workflow designed to agnostically identify and give confidences of microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with…

   JavaScript 82 12

2. Basestack Basestack Public archive

   Basestack is a platform for rapid and real time analysis of NGS data. It provides a executable application that connects standard bionformatics tools to a user interface. It is usable on all major …

   JavaScript 27 1

3. mytax mytax Public

   mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification

   JavaScript 14 2

4. DeepPaint DeepPaint Public

   A python package for exploration and classification of Cell Painting data.

   Jupyter Notebook 6 1

5. microbert microbert Public

   Leveraging Language Models for Analysis of Metagenomic Sequencing Data

   Python 4

6. basestack_consensus basestack_consensus Public

   This repository is a Dockerized pipeline for creating consensus viral genomes from Oxford Nanopore data. This pipeline leverages the ARTIC Network bioinformatics pipeline and couples many annotatio…

   Shell 3 2