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17 followers · 11 following
  • Repertoire Immune Medicines
  • Cambridge, MA

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

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johnabel/README.md

Hello! 👋

I'm a scientist trained in machine learning, systems biology, and chemical engineering. I currently manage a small ML and engineering team at Repertoire (https://github.com/cogentherapeutics), we're working on engineering the immune synapse. Previously I was at {PathAI, MIT, MGH, Harvard}.

Places I exist online are:

Outside of work you can generally find me 🧑‍🧑‍🧒 ⛷ 🛫 🤘

Pinned Loading

  1. gillespy gillespy Public

    A Python package for stochastic model building and simulation. Published as Abel et al., IEEE Life Sci Lett 2017.

    Python 7 15

  2. per2py per2py Public

    Python code for automated analysis of Per2::iLuc bioluminescence data. Published in Shan, Abel, ... Doyle III, Takahashi, Neuron 2021.

    Python 2

  3. mazuski_vip_firing_optogenetics mazuski_vip_firing_optogenetics Public

    Rough code and data for spike pattern ID and in vivo analysis used in Mazuski, Abel, ... Doyle III, Herzog. Neuron, 2018

    Python 2

  4. dissertation dissertation Public

    My doctoral dissertation TeX source files.

    TeX