[pre-commit.ci] pre-commit autoupdate

.mdl_style.rb

@@ -4,4 +4,4 @@
 exclude_rule 'MD033'  # Inline HTML
 exclude_rule 'MD034'  # Bare URL used
 exclude_rule 'MD036'  # Emphasis used instead of a header
-rule 'MD013', :line_length => 120, :code_blocks => false, :tables => false
+rule 'MD013', :line_length => 120, :ignore_code_blocks => true, :tables => false

docs/source/data_management/fair_principles.md

@@ -126,4 +126,4 @@ must be well-described to enable replication and/or combination in different set
 - **NIH** = National Institutes of Health
 - **NOAA** = National Oceanic and Atmospheric Administration
 
-Credit: Content taken from a Confluence guide written by Anne Wilson, and modified by Shawn Polson in 2019
+Credit: Content taken from a Confluence guide written by Anne Wilson, and modified by Shawn Polson in 2019

docs/source/data_management/file_formats/netcdf.md

@@ -121,4 +121,4 @@ There are two netCDF data models:
 * [NetCDF ToolsUI](https://docs.unidata.ucar.edu/netcdf-java/current/userguide/toolsui_ref.html)
 * [NetCDF Workshop Materials](https://www.unidata.ucar.edu/software/netcdf/workshops/2011/index.html)
 
-Credit: Content taken from a Confluence guide written by Doug Lindholm
+Credit: Content taken from a Confluence guide written by Doug Lindholm

docs/source/data_management/metadata.md

@@ -166,4 +166,4 @@ Provenance is often provided as descriptive prose, making machine-readable text
 - **LEMR** = LASP Extended Metadata Repository
 - **SPASE** = Space Physics Archive Search and Extract
 
-Credit: Content taken from a Confluence guide written by Anne Wilson and Shawn Polson.
+Credit: Content taken from a Confluence guide written by Anne Wilson and Shawn Polson.

docs/source/licensing.md

@@ -87,4 +87,4 @@ you’re distributing/producing.
 * [Choose a license](https://choosealicense.com/)
 * [Open Source Initiative (OSI)](https://opensource.org/licenses)
 * [The Turing Way overview of licensing](https://the-turing-way.netlify.app/reproducible-research/licensing)
-* [Free and Open Source License Comparison chart](https://en.wikipedia.org/wiki/Comparison_of_free_and_open-source_software_licenses)
+* [Free and Open Source License Comparison chart](https://en.wikipedia.org/wiki/Comparison_of_free_and_open-source_software_licenses)

docs/source/workflows/docker/beginner_guide_to_docker.md

@@ -190,4 +190,4 @@ docker image prune
 * **ps** = Process Status
 * **tty** = TeleTYpe (terminal)
 
-*Credit: Content taken from a Confluence guide written by Maxine Hartnett*
+*Credit: Content taken from a Confluence guide written by Maxine Hartnett*

docs/source/workflows/docker/containerizing_idl_with_docker.md

@@ -169,7 +169,11 @@ running on the host machine from within the non-IDL container.
  In this example a container is created from the official `CentOS` image:
 
 ```bash
-docker container run -it --name=centos_container --rm -v /var/run/docker.sock:/var/run/docker.sock -v /usr/bin/docker:/usr/bin/docker centos bash
+docker container run -it \
+  --name=centos_container --rm \
+  -v /var/run/docker.sock:/var/run/docker.sock \
+  -v /usr/bin/docker:/usr/bin/docker \
+  centos bash
 ```
 
 This `docker container run` command generates a CentOS container and initiates an interactive connection to that
@@ -240,7 +244,12 @@ Now, as in the previous example, spin up a non-IDL container based on the offici
 additional bind mount for the newly-created data volume:
 
 ```bash
-docker container run --rm -it --name=centos_container -v /var/run/docker.sock:/var/run/docker.sock -v /usr/bin/docker:/usr/bin/docker -v SharedData:/src centos bash
+docker container run --rm -it \
+  --name=centos_container \
+  -v /var/run/docker.sock:/var/run/docker.sock \
+  -v /usr/bin/docker:/usr/bin/docker \
+  -v SharedData:/src \
+  centos bash
 ```
 
 #### In the Interactive Shell Inside the `CentOS` Container
@@ -296,7 +305,12 @@ mounted to the `/src` directory in the container.
 Now create the non-IDL container named `centos_container`:
 
 ```bash
-docker container run --rm -it --name=centos_container -v /Users/stmu4541/projects/docker/src:/src -v /var/run/docker.sock:/var/run/docker.sock -v /usr/bin/docker:/usr/bin/docker lentos bash
+docker container run --rm -it \
+  --name=centos_container \
+  -v /Users/stmu4541/projects/docker/src:/src \
+  -v /var/run/docker.sock:/var/run/docker.sock \
+  -v /usr/bin/docker:/usr/bin/docker \
+  lentos bash
 ```
 
 Here, `lentos`, which immediately precedes the bash command specifies the official `centos` image.
@@ -315,7 +329,12 @@ Using a Jenkins-based principal container is not significantly different than th
 latest `CentOS` OS.
 
 ```bash
-docker container run --name=jenkins -v /var/run/docker.sock:/var/run/docker.sock -v /usr/bin/docker:/usr/bin/docker -p 8080:8080 jenkins/jenkins:lts-centos
+docker container run \
+  --name=jenkins \
+  -v /var/run/docker.sock:/var/run/docker.sock \
+  -v /usr/bin/docker:/usr/bin/docker \
+  -p 8080:8080 \
+  jenkins/jenkins:lts-centos
 ```
 
 Note that a Dockerfile is not required for this simple example since the container is created from the official `CentOS`
@@ -418,4 +437,4 @@ docker container run -e DISPLAY=host.docker.internal:0 idlde_image
 * **VPN** = Virtual Private Network
 * **yum** = Yellowdog Updater, Modified
 
-*Credit: Content taken from a Confluence guide written by Steven Mueller*
+*Credit: Content taken from a Confluence guide written by Steven Mueller*

docs/source/workflows/docker/docker_compose_examples.md

@@ -359,4 +359,4 @@ And you will need some Flyway migration scripts to build up your DB schema howev
 * **apk** = Alpine Package Keeper
 * **pip** = Pip Installs Packages
 
-*Credit: Content taken from a Confluence guide written by Gavin Medley and Maxine Hartnett*
+*Credit: Content taken from a Confluence guide written by Gavin Medley and Maxine Hartnett*

docs/source/workflows/docker/export_display_with_docker.md

@@ -47,4 +47,4 @@ argument) allows the container access to the host machine X socket.
 
 * [Official Docker documentation](https://docs.docker.com/)
 
-*Credit: Content taken from a Confluence guide written by Steven Mueller*
+*Credit: Content taken from a Confluence guide written by Steven Mueller*

docs/source/workflows/docker/lasp_docker_registry.md

@@ -167,4 +167,4 @@ WEBSUPPORT ticket or send an email to `[email protected]`
 * **UI** = User Interface
 * **URL** = Uniform Resource Locator
 
-*Credit: Content taken from a Confluence guide written by Maxine Hartnett*
+*Credit: Content taken from a Confluence guide written by Maxine Hartnett*

docs/source/workflows/docker/lasp_image_registry.md

@@ -78,7 +78,10 @@ docker pull docker-registry.pdmz.lasp.colorado.edu/tsis/dsinteg2_migration
 Or, the following command:
 
 ```bash
-docker container run --user root --rm -it --name timDevContainer docker-registry.pdmz.lasp.colorado.edu/tsis/dsinteg2_migration bash
+docker container run --user root --rm -it \
+  --name timDevContainer \
+  docker-registry.pdmz.lasp.colorado.edu/tsis/dsinteg2_migration \
+  bash
 ```
 
 This will launch a container based on the registry `dsinteg2_migration` image and connect to that container with a
@@ -115,4 +118,4 @@ Only the image argument is relevant to the registry pull.
 * **TIM** = Total Irradiance Monitor
 * **URL** = Uniform Resource Locator
 
-*Credit: Content taken from a Confluence guide written by Steven Mueller*
+*Credit: Content taken from a Confluence guide written by Steven Mueller*

docs/source/workflows/jenkins_job_builder/containerize_jjb.md

@@ -6,4 +6,4 @@
 
 ## Acronyms
 
-*Credit: Content taken from a Confluence guide written by Steven Mueller*
+*Credit: Content taken from a Confluence guide written by Steven Mueller*

pyproject.toml

@@ -2,15 +2,15 @@
 requires = ["poetry-core"]
 build-backend = "poetry.core.masonry.api"
 
-[tool.poetry]
+[project]
 name = "developer-guide"
 version = "0.1.0"
 description = "Guidelines for software developers at LASP"
 authors = [
-    "Matthew Bourque <[email protected]>",
-    "Keira Brooks <[email protected]>",
-    "Veronica Martinez <[email protected]>",
-    "Alex Ware <[email protected]>"]
+    {name = "Matthew Bourque", email = "[email protected]>"},
+    {name = "Keira Brooks", email = "[email protected]>"},
+    {name = "Veronica Martinez", email = "[email protected]>"},
+    {name = "Alex Ware", email = "[email protected]>"}]
 readme = "README.md"
 license = "MIT"
 keywords = ["LASP", "Developer Guide", "Software"]
@@ -20,6 +20,9 @@ classifiers = [
     "Topic :: Scientific/Engineering",
 ]
 
+[tool.poetry]
+package-mode = false
+
 [tool.poetry.dependencies]
 myst-parser = "^3.0.1"
 python = ">=3.9,<4"