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Releases: louiejtaylor/grabseqs

0.7.0 - Allow users to pass custom args to fast(er)q-dump

29 Jan 22:12
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Version 0.7.0 consists of the following improvements:

  • Allow users to pass custom args to fast(er)q-dump
  • Minor re-writes of download handling code for easier readability

Thanks to an anonymous reviewer for this good suggestion!

0.6.1 - Eliminate unnecessary warnings from pigz

20 Dec 18:32
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Eliminate warnings from pigz for zipping files that don't exist by explicitly validating file existence beforehand (#34).

0.6.0 - Gracefully handle incomplete or missing dependencies

13 Dec 01:34
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Merge pull request #42 from louiejtaylor/v0.6.0

grabseqs v0.6.0

0.5.0 - Standardize metadata from all repositories

12 Apr 18:07
14e768a
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Merge pull request #26 from louiejtaylor/format_metadata

Format metadata for all repositories, dynamic adding to existing metadata .csv files

Abstract functions to grabseqslib

04 Jan 16:15
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0.3.0

Merge branch 'master' of https://github.com/louiejtaylor/grabseqs

Fix issue converting to .fastq from MG-RAST

19 Dec 01:10
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0.2.12

fix fa-fq conversion issue with MG-RAST

More helpful error messages

12 Dec 16:46
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0.2.11

fix infinite error messages

Add helpful error messages when NCBI samples not found

11 Dec 14:57
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0.2.10

better handle failures in parsing run IDs

Patch SRA downloading retries

10 Dec 22:23
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Allow user to not search NCBI for SRR#

06 Dec 20:59
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(and just pass the SRR through). This will fix the problem where a single SRR was associated with multiple other SRRs, with no way to disambiguate them.