Releases: louiejtaylor/grabseqs
Releases · louiejtaylor/grabseqs
0.7.0 - Allow users to pass custom args to fast(er)q-dump
Version 0.7.0 consists of the following improvements:
- Allow users to pass custom args to fast(er)q-dump
- Minor re-writes of download handling code for easier readability
Thanks to an anonymous reviewer for this good suggestion!
0.6.1 - Eliminate unnecessary warnings from pigz
Eliminate warnings from pigz for zipping files that don't exist by explicitly validating file existence beforehand (#34).
0.6.0 - Gracefully handle incomplete or missing dependencies
Merge pull request #42 from louiejtaylor/v0.6.0 grabseqs v0.6.0
0.5.0 - Standardize metadata from all repositories
Merge pull request #26 from louiejtaylor/format_metadata Format metadata for all repositories, dynamic adding to existing metadata .csv files
Abstract functions to grabseqslib
0.3.0 Merge branch 'master' of https://github.com/louiejtaylor/grabseqs
Fix issue converting to .fastq from MG-RAST
0.2.12 fix fa-fq conversion issue with MG-RAST
More helpful error messages
0.2.11 fix infinite error messages
Add helpful error messages when NCBI samples not found
0.2.10 better handle failures in parsing run IDs
Patch SRA downloading retries
Related to sunbeam-labs/sunbeam#179
Allow user to not search NCBI for SRR#
(and just pass the SRR through). This will fix the problem where a single SRR was associated with multiple other SRRs, with no way to disambiguate them.