Skip to content

R (extended)

R (extended) #9

Workflow file for this run

# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
name: R (extended)
# Runs weekly. This catches changes that happen because of
# dependency updates and catches some of the more infrequent/obscure
# changes that affect the R package.
on:
# Also can trigger manually (e.g., if release is upcoming, etc.)
workflow_dispatch:
schedule:
- cron: '5 0 * * 0'
pull_request:
branches:
- main
paths:
- ".github/workflows/r-extended.yml"
permissions:
contents: read
jobs:
# Runs R CMD check on the same platforms/R versions CRAN does
cran:
strategy:
matrix:
rversion: [oldrel, release, devel]
os: [macOS, windows, ubuntu]
pkg: [adbcdrivermanager, adbcsqlite, adbcpostgresql, adbcflightsql, adbcsnowflake]
fail-fast: false
uses: ./.github/workflows/r-check.yml
with:
os: ${{ matrix.os }}
pkg: ${{ matrix.pkg }}
rversion: ${{ matrix.rversion }}
secrets:
SNOWFLAKE_URI: ${{ secrets.SNOWFLAKE_URI }}
# Check older versions of R on Linux. This catches accidental use of newer R functions.
rversions:
strategy:
matrix:
rversion: ["3.6", "4.0", "4.1"]
os: [ubuntu]
pkg: [adbcdrivermanager, adbcsqlite, adbcpostgresql, adbcflightsql, adbcsnowflake]
fail-fast: false
uses: ./.github/workflows/r-check.yml
with:
os: ${{ matrix.os }}
pkg: ${{ matrix.pkg }}
rversion: ${{ matrix.rversion }}
secrets:
SNOWFLAKE_URI: ${{ secrets.SNOWFLAKE_URI }}
# Checks on older verions of R on Windows. The Windows build system changed
# several times so we need to check packages on every version. Go-based
# drivers aren't supported before 4.2, so we don't check them here.
# We don't need to check R 4.1 because the build system for R 4.0 and R 4.1
# are the same.
winrversions:
strategy:
matrix:
rversion: ["3.6", "4.0"]
os: [windows]
pkg: [adbcdrivermanager, adbcsqlite, adbcpostgresql]
fail-fast: false
uses: ./.github/workflows/r-check.yml
with:
os: ${{ matrix.os }}
pkg: ${{ matrix.pkg }}
rversion: ${{ matrix.rversion }}
secrets:
SNOWFLAKE_URI: ${{ secrets.SNOWFLAKE_URI }}
# Runs tests with valgrind. Go does not support valgrind, so we don't run
# those tests here.
valgrind:
name: "valgrind (${{ matrix.pkg }})"
runs-on: ${{ matrix.os }}-latest
strategy:
matrix:
rversion: [release]
os: [ubuntu]
pkg: [adbcdrivermanager, adbcsqlite, adbcpostgresql]
fail-fast: false
steps:
- uses: actions/checkout@v4
- uses: r-lib/actions/setup-r@v2
with:
rversion: ${{ matrix.rversion }}
use-public-rspm: true
- name: Install valgrind
run: |
sudo apt-get install -y valgrind
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: local::../adbcdrivermanager
working-directory: r/${{ matrix.pkg }}
- name: Start postgres test database
if: matrix.pkg == 'adbcpostgresql'
run: |
cd r/adbcpostgresql
docker compose up --detach postgres-test
ADBC_POSTGRESQL_TEST_URI="postgresql://localhost:5432/postgres?user=postgres&password=password"
echo "ADBC_POSTGRESQL_TEST_URI=${ADBC_POSTGRESQL_TEST_URI}" >> $GITHUB_ENV
- name: Run devtools::test() with valgrind
run: |
cd r/${{ matrix.pkg }}
R -d "valgrind --tool=memcheck --leak-check=full --suppressions=../valgrind.supp --error-exitcode=1" -e "testthat::test_local()" > valgrind.out 2>&1
- name: Show output
if: always()
run: |
cd r/${{ matrix.pkg }}
cat valgrind.out
- name: Shutdown docker compose services
if: always()
run: |
docker compose down