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@marbl

MarBL

Maryland Bioinformatics Labs

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  1. CHM13 CHM13 Public

    The complete sequence of a human genome

    996 100

  2. canu canu Public

    A single molecule sequence assembler for genomes large and small.

    C++ 693 179

  3. Krona Krona Public

    Interactively explore metagenomes and more from a web browser.

    JavaScript 491 106

  4. Mash Mash Public

    Fast genome and metagenome distance estimation using MinHash

    C++ 424 94

  5. verkko verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    Python 366 33

  6. merqury merqury Public

    k-mer based assembly evaluation

    Shell 331 21

Repositories

Showing 10 of 41 repositories
  • ModDotPlot Public
    marbl/ModDotPlot’s past year of commit activity
    Python 170 MIT 12 4 0 Updated Oct 13, 2025
  • parsnp Public

    Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surroundin…

    marbl/parsnp’s past year of commit activity
    C++ 146 27 30 0 Updated Oct 2, 2025
  • TTT Public
    marbl/TTT’s past year of commit activity
    Python 3 0 0 0 Updated Sep 30, 2025
  • verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    marbl/verkko’s past year of commit activity
    Python 366 33 20 0 Updated Sep 29, 2025
  • HG002 Public

    A complete diploid human genome

    marbl/HG002’s past year of commit activity
    136 5 1 0 Updated Sep 26, 2025
  • T2T-Browser Public

    Genome browser hub for the T2T genomes and resources

    marbl/T2T-Browser’s past year of commit activity
    HTML 24 3 0 0 Updated Sep 26, 2025
  • Mash Public

    Fast genome and metagenome distance estimation using MinHash

    marbl/Mash’s past year of commit activity
    C++ 424 94 84 3 Updated Sep 19, 2025
  • HG002-issues Public

    HG002 human reference genome issue tracking and polishing

    marbl/HG002-issues’s past year of commit activity
    11 0 30 0 Updated Sep 11, 2025
  • GQC Public

    Python package for comparing genome assemblies and read data to the diploid Q100 benchmark

    marbl/GQC’s past year of commit activity
    Python 13 0 2 0 Updated Sep 11, 2025
  • canu Public

    A single molecule sequence assembler for genomes large and small.

    marbl/canu’s past year of commit activity
    C++ 693 179 5 2 Updated Sep 4, 2025
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