#428 - Read document ids from downloaded files in github integration …

…tests

- use grep/awk to extract the first id from an ontology and a codeable_concept file to use for checks

.github/scripts/post-elastic-test-queries.sh

@@ -1,6 +1,44 @@
 #!/bin/bash -e
 
 curl "$ELASTIC_HOST/_cat/indices"
+ls -la
+ls -la elastic
+
+onto_example_id=$(grep '"_id":' ./elastic/onto_es__ontology_* | awk -F'"_id": "' '{print $2}' | awk -F'"' '{print $1}' | head -n 1)
+cc_example_id=$(grep '"_id":' ./elastic/onto_es__codeable_concept_* | awk -F'"_id": "' '{print $2}' | awk -F'"' '{print $1}' | head -n 1)
+
+response=$(curl -s -w "%{http_code}" -o response_body "$ELASTIC_HOST/ontology/_doc/$onto_example_id")
+http_code="${response: -3}"
+json_body=$(cat response_body)
+
+if [ "$http_code" -eq 200 ]; then
+    if echo "$json_body" | jq '.found == true' | grep -q true; then
+        echo "Ontology Document with id $onto_example_id found in elastic search"
+    else
+        echo "Empty or nonexistent response from elastic search for ontology document with id $onto_example_id"
+        exit 1
+    fi
+else
+    echo "Response code $http_code"
+    exit 1
+fi
+
+
+response=$(curl -s -w "%{http_code}" -o response_body "$ELASTIC_HOST/codeable_concept/_doc/$cc_example_id")
+http_code="${response: -3}"
+json_body=$(cat response_body)
+
+if [ "$http_code" -eq 200 ]; then
+    if echo "$json_body" | jq '.found == true' | grep -q true; then
+        echo "Codeable Concept Document with id $cc_example_id found in elastic search"
+    else
+        echo "Empty or nonexistent response from elastic search for codeable_concept document with id $cc_example_id"
+        exit 1
+    fi
+else
+    echo "Response code $http_code"
+    exit 1
+fi
 
 access_token="$(curl -s --request POST \
   --url http://localhost:8083/auth/realms/dataportal/protocol/openid-connect/token \
@@ -27,6 +65,22 @@ else
     exit 1
 fi
 
+response=$(curl -s -w "%{http_code}" --header "Authorization: Bearer $access_token" -o response_body "http://localhost:8091/api/v4/terminology/entry/$onto_example_id")
+http_code="${response: -3}"
+json_body=$(cat response_body)
+
+if [ "$http_code" -eq 200 ]; then
+    if echo "$json_body" | jq '.totalHits > 0' | grep -q true; then
+        echo "OK response with non-empty array"
+    else
+        echo "Empty or nonexistent response"
+        exit 1
+    fi
+else
+    echo "Response code $http_code"
+    exit 1
+fi
+
 response=$(curl -s -w "%{http_code}" --header "Authorization: Bearer $access_token" -o response_body "http://localhost:8091/api/v4/codeable-concept/entry/search?searchterm=Vectorcardiogram")
 http_code="${response: -3}"
 json_body=$(cat response_body)
@@ -43,5 +97,21 @@ else
     exit 1
 fi
 
+response=$(curl -s -w "%{http_code}" --header "Authorization: Bearer $access_token" -o response_body "http://localhost:8091/api/v4/codeable-concept/entry/$cc_example_id")
+http_code="${response: -3}"
+json_body=$(cat response_body)
+
+if [ "$http_code" -eq 200 ]; then
+    if echo "$json_body" | jq -e '.code and .code != ""' | grep -q true; then
+        echo "OK response with non-empty array"
+    else
+        echo "Empty or nonexistent response"
+        exit 1
+    fi
+else
+    echo "Response code $http_code"
+    exit 1
+fi
+
 echo "All elastic search tests completed"
 exit 0