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Update HCS preprocess script to save norm stats per timepoint in the zarr json

@edyoshikun edyoshikun added the enhancement New feature or request label Dec 9, 2025
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@alxndrkalinin this might also help exploring the idea of smooth normalization over time for Cytoland. I think that using these stats to then ensure the phase values over time are smoother, should also produce smoother VS results.

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I added some tests that we didn't have for these functions. I think we are good to go assuming they all pass. Thanks @ritvikvasan . Feel free to merge it if everything passes

@ritvikvasan ritvikvasan merged commit 44b25b9 into main Dec 16, 2025
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@ritvikvasan ritvikvasan deleted the timepoint_norm branch December 16, 2025 17:55
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3 participants