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This PR adds a simple annotator of cell states and returns ultrack csv files

@edyoshikun edyoshikun requested a review from srivarra December 12, 2025 02:47
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I realized we should add all the tracking columns, so that we can just easily concat them and use them for training the linear classifiers and our load_annotations() functions.

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@Soorya19Pradeep pointed out we need a way to version the annotations. I tested earlier today to use the os.userlogin() which spits out ids for each one of us and datetimes. To resume or edit existing annotations, we will still need to add some wrappers potentially from ultracks napari plugin.

@edyoshikun edyoshikun added documentation Improvements or additions to documentation enhancement New feature or request labels Dec 18, 2025
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@srivarra should we consider moving this to napari-iohub instead? there is a lot of code duplication.

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srivarra commented Dec 19, 2025

@edyoshikun

@srivarra should we consider moving this to napari-iohub instead? there is a lot of code duplication.

Yeah let's do that instead. I'll go ahead and make an issue and start transferring the functionality over, but keep this branch open so you and others can still use it.

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3 participants