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Compute emission probability bb betabinom mix weighted thread #1

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0daa4a1
fix
michaelJwilson Jul 9, 2024
0f3ed8a
add bbab
michaelJwilson Jul 9, 2024
fac206d
fix
michaelJwilson Jul 11, 2024
6075add
fix
michaelJwilson Jul 11, 2024
80eedf4
works with a speedup of 2.63
michaelJwilson Jul 11, 2024
b2fc358
add nan tumor frac guard; factorial for X.
michaelJwilson Jul 12, 2024
acfa899
fix
michaelJwilson Jul 12, 2024
e3122c7
finished bb.
michaelJwilson Jul 12, 2024
6cc41f6
weighted that is accurate for 84% of elements.
michaelJwilson Jul 12, 2024
309622e
working weighted bb.
michaelJwilson Jul 12, 2024
e800354
fix
michaelJwilson Jul 12, 2024
4375ee9
wip
michaelJwilson Jul 12, 2024
4464e04
fix
michaelJwilson Jul 12, 2024
1a3f7b2
working nb and bb, now for bb weighted.
michaelJwilson Jul 12, 2024
2b1f8a4
working for nb, bb, bb weighted/mix. > nthread speedup.
michaelJwilson Jul 12, 2024
c03f375
quick edit;
michaelJwilson Jul 12, 2024
331193f
remove emlib
michaelJwilson Jul 15, 2024
b27bb9f
tidy
michaelJwilson Jul 15, 2024
6b982d4
update gitignore
michaelJwilson Jul 15, 2024
53f3f13
fix
michaelJwilson Jul 15, 2024
aa6c5e3
fix
michaelJwilson Jul 16, 2024
bc22cc0
fix
michaelJwilson Jul 16, 2024
0e16667
fix one test.
michaelJwilson Jul 16, 2024
e68d8bf
add docstrings to tests.
michaelJwilson Jul 16, 2024
a35af49
SIC reinstate zeros instead of NANs where RD is 0.
michaelJwilson Jul 16, 2024
0ca17c8
add ability to broadcast model params.
michaelJwilson Jul 16, 2024
883dad8
add TODO for toggling threading on n_spots.
michaelJwilson Jul 16, 2024
13d91d3
fix
michaelJwilson Jul 16, 2024
33a23ff
bb_ab support.
michaelJwilson Jul 18, 2024
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4 changes: 3 additions & 1 deletion .gitignore
Original file line number Diff line number Diff line change
@@ -1 +1,3 @@
/target
target/
test_calicostem.py.lprof
__pycache__
4 changes: 4 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
Compilation
```
maturin develop --release
```
2 changes: 1 addition & 1 deletion pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -16,4 +16,4 @@ build-backend = "maturin"

[tool.maturin]
python-source = "python"
module-name = "calicostem.core"
module-name = "calicostem.calicostem"
Empty file removed python/__init__.py
Empty file.
75 changes: 0 additions & 75 deletions src/emlib.rs

This file was deleted.

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